miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9353 5' -51.3 NC_002512.2 + 82233 0.66 0.998462
Target:  5'- cGCCCCcGCGaGGaGGGAugcgAAGAGGCg -3'
miRNA:   3'- -CGGGGcUGCcCCaCUCUua--UUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 134263 0.66 0.998462
Target:  5'- aGCCCaCGAucugcugcuCGuGGUGAGGG-AGAAGGCg -3'
miRNA:   3'- -CGGG-GCU---------GCcCCACUCUUaUUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 104628 0.66 0.998462
Target:  5'- ----gGACGGGG-GAGAGggGGAGGGCg -3'
miRNA:   3'- cggggCUGCCCCaCUCUUa-UUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 143677 0.66 0.998434
Target:  5'- uCCCCGaagccggGCGGGGUGucGGGcacGGAGGGCc -3'
miRNA:   3'- cGGGGC-------UGCCCCAC--UCUua-UUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 107000 0.66 0.998163
Target:  5'- cGCCCgGGcCGGGGUcggccGAGAGcc--GGGCg -3'
miRNA:   3'- -CGGGgCU-GCCCCA-----CUCUUauuuUCUG- -5'
9353 5' -51.3 NC_002512.2 + 210264 0.66 0.998163
Target:  5'- uGCgCCGGCucGGGG-GAGAggGAGguGGGCg -3'
miRNA:   3'- -CGgGGCUG--CCCCaCUCUuaUUU--UCUG- -5'
9353 5' -51.3 NC_002512.2 + 121979 0.66 0.998163
Target:  5'- cGCCcgCCGGCGGGacGAGAG--GAAGAUc -3'
miRNA:   3'- -CGG--GGCUGCCCcaCUCUUauUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 227743 0.66 0.997816
Target:  5'- cGCCgUGACGGGG-GAGGcgAc--GACc -3'
miRNA:   3'- -CGGgGCUGCCCCaCUCUuaUuuuCUG- -5'
9353 5' -51.3 NC_002512.2 + 200241 0.66 0.997816
Target:  5'- aGCCCgacgaCGACGGGGacgacGAGGAcGAcgacgGGGACg -3'
miRNA:   3'- -CGGG-----GCUGCCCCa----CUCUUaUU-----UUCUG- -5'
9353 5' -51.3 NC_002512.2 + 123149 0.66 0.997415
Target:  5'- aGCgCCGcCGGGGccGAGGAggc-GGACa -3'
miRNA:   3'- -CGgGGCuGCCCCa-CUCUUauuuUCUG- -5'
9353 5' -51.3 NC_002512.2 + 133010 0.66 0.997415
Target:  5'- gGCCgCCGACGGaGaacUGGGA---GAAGACg -3'
miRNA:   3'- -CGG-GGCUGCC-Cc--ACUCUuauUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 210395 0.66 0.997415
Target:  5'- cUUCCGACGcGGUGGGGAacgcggcgGGGAGGCg -3'
miRNA:   3'- cGGGGCUGCcCCACUCUUa-------UUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 149427 0.66 0.997239
Target:  5'- aCCgCGGCGGGGgcgggcgcgggggGAGAGgaaGGGGACc -3'
miRNA:   3'- cGGgGCUGCCCCa------------CUCUUau-UUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 227456 0.66 0.996955
Target:  5'- cGCgCUGcCGGGG-GAGAGgccGGGGGCg -3'
miRNA:   3'- -CGgGGCuGCCCCaCUCUUau-UUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 219788 0.66 0.996955
Target:  5'- gGCCCgGcCGGGGacacaGAUAGGGGACg -3'
miRNA:   3'- -CGGGgCuGCCCCacuc-UUAUUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 90537 0.67 0.99643
Target:  5'- aCgCgGugGGGGagGAGGAgcgGGAGGACg -3'
miRNA:   3'- cGgGgCugCCCCa-CUCUUa--UUUUCUG- -5'
9353 5' -51.3 NC_002512.2 + 150083 0.67 0.99643
Target:  5'- cGCCgCCGuCGGGcGaugGAGAcgGAcGAGACg -3'
miRNA:   3'- -CGG-GGCuGCCC-Ca--CUCUuaUU-UUCUG- -5'
9353 5' -51.3 NC_002512.2 + 196269 0.67 0.99643
Target:  5'- cGCCUCGGCGaGGG-GGGAAgGAAucgcuGAUg -3'
miRNA:   3'- -CGGGGCUGC-CCCaCUCUUaUUUu----CUG- -5'
9353 5' -51.3 NC_002512.2 + 227507 0.67 0.99643
Target:  5'- cGCCgCGAccCGGGGggGAGAGUccggcGGcGGACg -3'
miRNA:   3'- -CGGgGCU--GCCCCa-CUCUUA-----UUuUCUG- -5'
9353 5' -51.3 NC_002512.2 + 228718 0.67 0.996258
Target:  5'- uGUCgCGggggaagacgugauGCGGGGUagGGGAGUGAGAGAg -3'
miRNA:   3'- -CGGgGC--------------UGCCCCA--CUCUUAUUUUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.