miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9354 3' -46.5 NC_002512.2 + 212699 0.66 0.999996
Target:  5'- uGGGGAAGgAGGAAGuaaaacgGugGGCGGUg -3'
miRNA:   3'- -CUCUUUCaUCUUUCuag----CugCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 227616 0.66 0.999996
Target:  5'- cGGAGGGcGGGcggcggcggcGAGGUCaGGCGACGGa -3'
miRNA:   3'- cUCUUUCaUCU----------UUCUAG-CUGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 100382 0.66 0.999995
Target:  5'- cGAGucAGcAGGAGcGAgcuccagUUGGCGACGGCg -3'
miRNA:   3'- -CUCuuUCaUCUUU-CU-------AGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 160629 0.66 0.999995
Target:  5'- cGAGGAGauccGGGAcgcggacgacccuGGAUCGACcGCGGCg -3'
miRNA:   3'- -CUCUUUca--UCUU-------------UCUAGCUGcUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 221407 0.66 0.999995
Target:  5'- cGGGGAGgcGgcGGGUCugucCGACGGCc -3'
miRNA:   3'- cUCUUUCauCuuUCUAGcu--GCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 204841 0.66 0.999995
Target:  5'- -------cGGGAGGA-CGACGGCGGUc -3'
miRNA:   3'- cucuuucaUCUUUCUaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 125611 0.66 0.999995
Target:  5'- cGGAcgcgAGAAAGA-CGcCGGCGGCg -3'
miRNA:   3'- cUCUuucaUCUUUCUaGCuGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 77959 0.67 0.999993
Target:  5'- cGAGccGGGUucgucucGGGGAcCGACGACGGCa -3'
miRNA:   3'- -CUCu-UUCAuc-----UUUCUaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 100880 0.67 0.999993
Target:  5'- uGAGGAAGcGGAugccGUCGGCGAgucCGGUg -3'
miRNA:   3'- -CUCUUUCaUCUuuc-UAGCUGCU---GCCG- -5'
9354 3' -46.5 NC_002512.2 + 82241 0.67 0.999993
Target:  5'- cGAGGAGGgaugcgaagaggcgGGGAGGAUCGcacgccaGCGACaGGUc -3'
miRNA:   3'- -CUCUUUCa-------------UCUUUCUAGC-------UGCUG-CCG- -5'
9354 3' -46.5 NC_002512.2 + 149620 0.67 0.99999
Target:  5'- gGGGAGAGUccgGGGAGGAcCGcACGGagccCGGCc -3'
miRNA:   3'- -CUCUUUCA---UCUUUCUaGC-UGCU----GCCG- -5'
9354 3' -46.5 NC_002512.2 + 10889 0.67 0.99999
Target:  5'- aGGAGAGc-GAGAGAUCuGACagagaACGGCg -3'
miRNA:   3'- cUCUUUCauCUUUCUAG-CUGc----UGCCG- -5'
9354 3' -46.5 NC_002512.2 + 129287 0.67 0.99999
Target:  5'- uGGGggGGgggGGAGGGAgc-ACGGCGGa -3'
miRNA:   3'- -CUCuuUCa--UCUUUCUagcUGCUGCCg -5'
9354 3' -46.5 NC_002512.2 + 200476 0.67 0.99999
Target:  5'- cAGGucGUAGGAGucgugCGAgGGCGGCg -3'
miRNA:   3'- cUCUuuCAUCUUUcua--GCUgCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 228961 0.67 0.99999
Target:  5'- gGAGAGGGgcGGAGGG-CGGgaGACGGa -3'
miRNA:   3'- -CUCUUUCauCUUUCUaGCUg-CUGCCg -5'
9354 3' -46.5 NC_002512.2 + 113816 0.67 0.99999
Target:  5'- cGAGGAAGUAGGGguAGuaggCGAUgaaGACGGa -3'
miRNA:   3'- -CUCUUUCAUCUU--UCua--GCUG---CUGCCg -5'
9354 3' -46.5 NC_002512.2 + 209282 0.67 0.99999
Target:  5'- cGAGGAcGUGGAgcgcugcgucaAGGAga-ACGGCGGCg -3'
miRNA:   3'- -CUCUUuCAUCU-----------UUCUagcUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 41114 0.67 0.999986
Target:  5'- cGAGAucu--GAGAGGUUGGCuucGAUGGCa -3'
miRNA:   3'- -CUCUuucauCUUUCUAGCUG---CUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 126758 0.67 0.999986
Target:  5'- cGAGAcgccucGGGGcgCGGCGGCGGCg -3'
miRNA:   3'- -CUCUuucaucUUUCuaGCUGCUGCCG- -5'
9354 3' -46.5 NC_002512.2 + 168157 0.67 0.999986
Target:  5'- uGGggGGcGGAGAGGg-GACG-CGGCc -3'
miRNA:   3'- cUCuuUCaUCUUUCUagCUGCuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.