miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9354 5' -61 NC_002512.2 + 100011 0.66 0.788648
Target:  5'- -gGGCGacgGCGAaucccccgccgccgUCCUCCgccuCCGCCUCc- -3'
miRNA:   3'- gaCCGCa--CGCU--------------AGGAGG----GGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 201884 0.66 0.773688
Target:  5'- -cGGCG-GCGG-CUUCUCCGUCUCc- -3'
miRNA:   3'- gaCCGCaCGCUaGGAGGGGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 106677 0.66 0.762024
Target:  5'- -gGGCG-GCGAcguccucgggcagcUCCUCcucgucccguCCCGCCUCg- -3'
miRNA:   3'- gaCCGCaCGCU--------------AGGAG----------GGGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 154757 0.67 0.737254
Target:  5'- -cGGCGUcGCGGUgcccgUCUCCCCGUgUCc- -3'
miRNA:   3'- gaCCGCA-CGCUA-----GGAGGGGCGgAGaa -5'
9354 5' -61 NC_002512.2 + 106471 0.67 0.727919
Target:  5'- -gGGCG-GCGGgaCCUCgaCCGCCUCg- -3'
miRNA:   3'- gaCCGCaCGCUa-GGAGg-GGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 155391 0.67 0.699495
Target:  5'- gCUGGCGa--GGUCCUCUCCGUC-CUg -3'
miRNA:   3'- -GACCGCacgCUAGGAGGGGCGGaGAa -5'
9354 5' -61 NC_002512.2 + 165440 0.68 0.680277
Target:  5'- -cGGCGU-CGAUCC-CCUCGCCcgCUUu -3'
miRNA:   3'- gaCCGCAcGCUAGGaGGGGCGGa-GAA- -5'
9354 5' -61 NC_002512.2 + 77060 0.68 0.67061
Target:  5'- gUGGCGcUGCuGAUCCUgCUCGCCg--- -3'
miRNA:   3'- gACCGC-ACG-CUAGGAgGGGCGGagaa -5'
9354 5' -61 NC_002512.2 + 94092 0.68 0.67061
Target:  5'- -cGGCG-GCGGccgguccgacUCCUCCgCCaGCCUCUc -3'
miRNA:   3'- gaCCGCaCGCU----------AGGAGG-GG-CGGAGAa -5'
9354 5' -61 NC_002512.2 + 135350 0.68 0.67061
Target:  5'- -cGGCGcuggaacgGCGGUCC-CCCUGCgUCUa -3'
miRNA:   3'- gaCCGCa-------CGCUAGGaGGGGCGgAGAa -5'
9354 5' -61 NC_002512.2 + 93695 0.68 0.641469
Target:  5'- -cGGCGUcgacGCGAUCCcggcgaCCCCGCCg--- -3'
miRNA:   3'- gaCCGCA----CGCUAGGa-----GGGGCGGagaa -5'
9354 5' -61 NC_002512.2 + 107858 0.69 0.621996
Target:  5'- -gGGCGUGCGcgagcgCCgaUCCgCCGCCUCc- -3'
miRNA:   3'- gaCCGCACGCua----GG--AGG-GGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 201800 0.71 0.45345
Target:  5'- -gGGCG-GCGA-CCUCUCCGCCgUCUc -3'
miRNA:   3'- gaCCGCaCGCUaGGAGGGGCGG-AGAa -5'
9354 5' -61 NC_002512.2 + 161857 0.72 0.444756
Target:  5'- -cGGCGUcgGCGGUCCUCCCgggucggugCGUCUCg- -3'
miRNA:   3'- gaCCGCA--CGCUAGGAGGG---------GCGGAGaa -5'
9354 5' -61 NC_002512.2 + 143623 0.75 0.306051
Target:  5'- -cGGCGUuCGucCCUCCCCGCCUCg- -3'
miRNA:   3'- gaCCGCAcGCuaGGAGGGGCGGAGaa -5'
9354 5' -61 NC_002512.2 + 224688 0.75 0.299397
Target:  5'- gCUGGCccGCGGUCCUgCCCGCC-CUg -3'
miRNA:   3'- -GACCGcaCGCUAGGAgGGGCGGaGAa -5'
9354 5' -61 NC_002512.2 + 96356 0.76 0.25594
Target:  5'- -gGGCGUgagGCGAucgUCCUCCCCGgCCUCg- -3'
miRNA:   3'- gaCCGCA---CGCU---AGGAGGGGC-GGAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.