miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9355 5' -53.6 NC_002512.2 + 136826 0.66 0.985743
Target:  5'- cGACGaCGccCCGCGGCGUCGUc-UCg -3'
miRNA:   3'- uCUGCaGUuuGGCGCUGCAGCGucAG- -5'
9355 5' -53.6 NC_002512.2 + 145072 0.66 0.985743
Target:  5'- uGGACG-CGAAgaucgacgaguuCCGCGagGCGUCGCGGc- -3'
miRNA:   3'- -UCUGCaGUUU------------GGCGC--UGCAGCGUCag -5'
9355 5' -53.6 NC_002512.2 + 217049 0.66 0.985743
Target:  5'- cGGCG-CAGGCCGCGugcugcAUGUCGguGa- -3'
miRNA:   3'- uCUGCaGUUUGGCGC------UGCAGCguCag -5'
9355 5' -53.6 NC_002512.2 + 218106 0.66 0.98401
Target:  5'- cGGGCGUCGcGCC-CGGgGUCGCucgGGUa -3'
miRNA:   3'- -UCUGCAGUuUGGcGCUgCAGCG---UCAg -5'
9355 5' -53.6 NC_002512.2 + 209298 0.66 0.98401
Target:  5'- -uGCGUCAaggagAACgGCGGCGUCagGGUCg -3'
miRNA:   3'- ucUGCAGU-----UUGgCGCUGCAGcgUCAG- -5'
9355 5' -53.6 NC_002512.2 + 209075 0.66 0.98401
Target:  5'- cGACGUCuucgugcggGAGCC-CGACGUCcgGGUCg -3'
miRNA:   3'- uCUGCAG---------UUUGGcGCUGCAGcgUCAG- -5'
9355 5' -53.6 NC_002512.2 + 198952 0.66 0.98401
Target:  5'- gGGACcUCAGcgguCgCGUGGCGUCGC-GUCg -3'
miRNA:   3'- -UCUGcAGUUu---G-GCGCUGCAGCGuCAG- -5'
9355 5' -53.6 NC_002512.2 + 152024 0.66 0.98401
Target:  5'- gGGugGUCAugacgacACCGCGgaccuccgagaACGgagaccggUCGCGGUCa -3'
miRNA:   3'- -UCugCAGUu------UGGCGC-----------UGC--------AGCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 102697 0.67 0.982896
Target:  5'- aGGACGUgGcuGAgCGUGACGUUaguggcggccucgcgGCAGUCc -3'
miRNA:   3'- -UCUGCAgU--UUgGCGCUGCAG---------------CGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 157115 0.67 0.982122
Target:  5'- cGACGUCccuCC-CGGCGUCgGgGGUCg -3'
miRNA:   3'- uCUGCAGuuuGGcGCUGCAG-CgUCAG- -5'
9355 5' -53.6 NC_002512.2 + 151024 0.67 0.982122
Target:  5'- cGACG-CGAGCCaccucgagGCGGCGgcccgucaCGCGGUCc -3'
miRNA:   3'- uCUGCaGUUUGG--------CGCUGCa-------GCGUCAG- -5'
9355 5' -53.6 NC_002512.2 + 201688 0.67 0.981524
Target:  5'- aGGGCGgccgCGucuggugcgggaucGGCgGCGGCGUCGUcGUCg -3'
miRNA:   3'- -UCUGCa---GU--------------UUGgCGCUGCAGCGuCAG- -5'
9355 5' -53.6 NC_002512.2 + 199460 0.67 0.980071
Target:  5'- -cGCGUUcaGGGCCGCGACGaCGCccgcGUCc -3'
miRNA:   3'- ucUGCAG--UUUGGCGCUGCaGCGu---CAG- -5'
9355 5' -53.6 NC_002512.2 + 223923 0.67 0.980071
Target:  5'- gAGAgGUCGAGCCG-GACGgggaGGUCg -3'
miRNA:   3'- -UCUgCAGUUUGGCgCUGCagcgUCAG- -5'
9355 5' -53.6 NC_002512.2 + 177013 0.67 0.980071
Target:  5'- uGGGCGUCAgGGCCGCcugcGCGUCccgcCAGUUg -3'
miRNA:   3'- -UCUGCAGU-UUGGCGc---UGCAGc---GUCAG- -5'
9355 5' -53.6 NC_002512.2 + 102459 0.67 0.979856
Target:  5'- uGGCGUCGcggaggaGGgCGCGccCGUCGCGGUg -3'
miRNA:   3'- uCUGCAGU-------UUgGCGCu-GCAGCGUCAg -5'
9355 5' -53.6 NC_002512.2 + 89828 0.67 0.979203
Target:  5'- aGGACGUCgAGACCGCGcugcACGgcccgguucugcgUGCGGUg -3'
miRNA:   3'- -UCUGCAG-UUUGGCGC----UGCa------------GCGUCAg -5'
9355 5' -53.6 NC_002512.2 + 227695 0.67 0.977849
Target:  5'- gAGACGac-GACgGCGGCGggggCGCGGUa -3'
miRNA:   3'- -UCUGCaguUUGgCGCUGCa---GCGUCAg -5'
9355 5' -53.6 NC_002512.2 + 222225 0.67 0.977618
Target:  5'- uGGcCGUCgGGGCCGCGuccuuCGUCGCcguggcgGGUCu -3'
miRNA:   3'- -UCuGCAG-UUUGGCGCu----GCAGCG-------UCAG- -5'
9355 5' -53.6 NC_002512.2 + 160318 0.67 0.975451
Target:  5'- aAGACGUCGgagguGAUCGUGcggcACGUCGgGGUg -3'
miRNA:   3'- -UCUGCAGU-----UUGGCGC----UGCAGCgUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.