Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 157101 | 0.66 | 0.969189 |
Target: 5'- cGGgCCCg--UCCCGgcGAcgUCCCUCCc -3' miRNA: 3'- -CCaGGGagaAGGGCa-CUa-AGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 966 | 0.66 | 0.969189 |
Target: 5'- uGUCUCUCUUCUCGUcg-UCCuCUCUc -3' miRNA: 3'- cCAGGGAGAAGGGCAcuaAGG-GAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 151548 | 0.66 | 0.963024 |
Target: 5'- gGGUCCCg--UCCCGgucucgCCUUCCc -3' miRNA: 3'- -CCAGGGagaAGGGCacuaa-GGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 187595 | 0.66 | 0.963024 |
Target: 5'- -cUCCCUCUgUCCCGUaaaUCUCUCUg -3' miRNA: 3'- ccAGGGAGA-AGGGCAcuaAGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 7032 | 0.66 | 0.95964 |
Target: 5'- cGGUCCUUCUcgguugUCCCa----UCCCUCCc -3' miRNA: 3'- -CCAGGGAGA------AGGGcacuaAGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 128107 | 0.67 | 0.929959 |
Target: 5'- gGGcCuCCUCcUCCCGagGGUUCCCgCCg -3' miRNA: 3'- -CCaG-GGAGaAGGGCa-CUAAGGGaGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 1716 | 0.67 | 0.952246 |
Target: 5'- uGUCCUUCUUCCCcu--UUCCCUUUc -3' miRNA: 3'- cCAGGGAGAAGGGcacuAAGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 155219 | 0.68 | 0.924835 |
Target: 5'- cGUCCCUCcgUCCCGUcccccGAgcUCCC-CCg -3' miRNA: 3'- cCAGGGAGa-AGGGCA-----CUa-AGGGaGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 215876 | 0.68 | 0.908122 |
Target: 5'- -aUCCCUCUcUCCCGUccccucgUCCCUCg- -3' miRNA: 3'- ccAGGGAGA-AGGGCAcua----AGGGAGga -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 191552 | 0.68 | 0.895876 |
Target: 5'- cGGaUCCCcgCgaUCCGUGuUUCCCUCCc -3' miRNA: 3'- -CC-AGGGa-GaaGGGCACuAAGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 75028 | 0.69 | 0.875902 |
Target: 5'- aGUCCUUCUUCCCcacGAUggacgcugccCCCUCCg -3' miRNA: 3'- cCAGGGAGAAGGGca-CUAa---------GGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 209976 | 0.7 | 0.830599 |
Target: 5'- aGGUCgCCaacggCUUCCCG-GggUUCCUCCg -3' miRNA: 3'- -CCAG-GGa----GAAGGGCaCuaAGGGAGGa -5' |
|||||||
9356 | 3' | -55.8 | NC_002512.2 | + | 224992 | 0.74 | 0.655155 |
Target: 5'- cGGcgCCCUCUUCCCGUcg--CCgCUCCUc -3' miRNA: 3'- -CCa-GGGAGAAGGGCAcuaaGG-GAGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home