Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9356 | 5' | -45.5 | NC_002512.2 | + | 166579 | 0.84 | 0.741024 |
Target: 5'- --cGGGGAGUGUcgggagaacgggcugGAGAagGAGGGGUCCCa -3' miRNA: 3'- cuuUCUCUCACA---------------UUUU--UUCCCCAGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 107141 | 0.81 | 0.866759 |
Target: 5'- cGGAGGAGAGggcccggaaaucgccGUAAGAGAGGGuGUCCUg -3' miRNA: 3'- -CUUUCUCUCa--------------CAUUUUUUCCC-CAGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 168110 | 0.78 | 0.94701 |
Target: 5'- ---cGGGAGcaggGUAGGAGAGGGG-CCCg -3' miRNA: 3'- cuuuCUCUCa---CAUUUUUUCCCCaGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 59034 | 0.77 | 0.969808 |
Target: 5'- -uGAGAGGGgacagGgacgAGAGAGGGGGUCuCCg -3' miRNA: 3'- cuUUCUCUCa----Ca---UUUUUUCCCCAG-GG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 180 | 0.75 | 0.98635 |
Target: 5'- cGGGAGGGAcGggGgcGAGAAGGGG-CCCg -3' miRNA: 3'- -CUUUCUCU-Ca-CauUUUUUCCCCaGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 229583 | 0.75 | 0.98635 |
Target: 5'- cGGGAGGGAcGggGgcGAGAAGGGG-CCCg -3' miRNA: 3'- -CUUUCUCU-Ca-CauUUUUUCCCCaGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 127305 | 0.72 | 0.998711 |
Target: 5'- aGGAGGAGAGgaUGGAGAccAGGGcGUCCUu -3' miRNA: 3'- -CUUUCUCUCacAUUUUU--UCCC-CAGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 127797 | 0.71 | 0.999136 |
Target: 5'- cAGGGAGAcGUGccgGAAGAAcucGGGUCCCg -3' miRNA: 3'- cUUUCUCU-CACa--UUUUUUc--CCCAGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 221598 | 0.7 | 0.999776 |
Target: 5'- cGGAGGGGGGUcgGUGGAcggcgaggagGGAGcGGGUCCa -3' miRNA: 3'- -CUUUCUCUCA--CAUUU----------UUUC-CCCAGGg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 151531 | 0.7 | 0.999776 |
Target: 5'- ---cGGGAaaacccGAAAAGGGGUCCCg -3' miRNA: 3'- cuuuCUCUcacau-UUUUUCCCCAGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 153585 | 0.7 | 0.999776 |
Target: 5'- cGggGGGGGG-GUAGGGGGGGGGg--- -3' miRNA: 3'- -CuuUCUCUCaCAUUUUUUCCCCaggg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 149447 | 0.7 | 0.999865 |
Target: 5'- gGggGGAGAG------GAAGGGGaCCCg -3' miRNA: 3'- -CuuUCUCUCacauuuUUUCCCCaGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 229657 | 0.69 | 0.999896 |
Target: 5'- gGAGAGAGAGcg-GGAAAAGGGGa--- -3' miRNA: 3'- -CUUUCUCUCacaUUUUUUCCCCaggg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 254 | 0.69 | 0.999896 |
Target: 5'- gGAGAGAGAGcg-GGAAAAGGGGa--- -3' miRNA: 3'- -CUUUCUCUCacaUUUUUUCCCCaggg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 227519 | 0.69 | 0.999935 |
Target: 5'- gGggGGAGAGUccggcggcggacggGgggAGGAGGGcGGGUCCg -3' miRNA: 3'- -CuuUCUCUCA--------------Ca--UUUUUUC-CCCAGGg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 228658 | 0.69 | 0.999955 |
Target: 5'- aGAAAGAGAGgcggGGAGGAcGGGG-CCg -3' miRNA: 3'- -CUUUCUCUCaca-UUUUUU-CCCCaGGg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 200421 | 0.68 | 0.999987 |
Target: 5'- cGGAGGAGGacGaGGAGAAGGGGUCg- -3' miRNA: 3'- -CUUUCUCUcaCaUUUUUUCCCCAGgg -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 96520 | 0.68 | 0.999987 |
Target: 5'- gGAGGGAGccgcgccggcGGUGUGAGccgggGccGGGGaUCCCg -3' miRNA: 3'- -CUUUCUC----------UCACAUUU-----UuuCCCC-AGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 160946 | 0.68 | 0.999991 |
Target: 5'- -uGGGGGGGUcac-GAGGGGGGaUCCCc -3' miRNA: 3'- cuUUCUCUCAcauuUUUUCCCC-AGGG- -5' |
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9356 | 5' | -45.5 | NC_002512.2 | + | 229067 | 0.67 | 0.999993 |
Target: 5'- aGAGGAGAGgagGAGAGAGGaGaCCCa -3' miRNA: 3'- cUUUCUCUCacaUUUUUUCCcCaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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