miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9357 5' -59.1 NC_002512.2 + 117337 0.67 0.845563
Target:  5'- -cGCUgGCGCCGGCGUUcucGCACGa-- -3'
miRNA:   3'- gaCGG-CGUGGCCGCAGcu-CGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 108801 0.67 0.845563
Target:  5'- -gGCCGCugCgGGCGcuguuccgCGAG-GCGUGCg -3'
miRNA:   3'- gaCGGCGugG-CCGCa-------GCUCgUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 149415 0.67 0.845563
Target:  5'- -gGCCGCGaggggaccgCGGCGggggCGGGCGCGg-- -3'
miRNA:   3'- gaCGGCGUg--------GCCGCa---GCUCGUGCaug -5'
9357 5' -59.1 NC_002512.2 + 171311 0.67 0.844797
Target:  5'- -cGCCauguugaGCACCGGCGUCGuGUAUc--- -3'
miRNA:   3'- gaCGG-------CGUGGCCGCAGCuCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 219051 0.67 0.840944
Target:  5'- -gGCCGCggcgcggggcuccccGCgGGCuUCGAGCucgACGUGCu -3'
miRNA:   3'- gaCGGCG---------------UGgCCGcAGCUCG---UGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 75233 0.67 0.83783
Target:  5'- -cGCCGUcgCGGUGaCGAGCGCGgccGCg -3'
miRNA:   3'- gaCGGCGugGCCGCaGCUCGUGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 151088 0.67 0.83783
Target:  5'- -gGuCCGCGCCGGaGaCGuGCACGUGu -3'
miRNA:   3'- gaC-GGCGUGGCCgCaGCuCGUGCAUg -5'
9357 5' -59.1 NC_002512.2 + 223195 0.67 0.829926
Target:  5'- -gGCCGCccgacggggaCGGCGUCccgGAGCGCGUc- -3'
miRNA:   3'- gaCGGCGug--------GCCGCAG---CUCGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 192599 0.67 0.829926
Target:  5'- -cGCUGCugCGGCGcgcgcggCGGGCgACGgcgGCc -3'
miRNA:   3'- gaCGGCGugGCCGCa------GCUCG-UGCa--UG- -5'
9357 5' -59.1 NC_002512.2 + 103152 0.67 0.829926
Target:  5'- -aGCagGCACuCGGCGUCGGuCACGUu- -3'
miRNA:   3'- gaCGg-CGUG-GCCGCAGCUcGUGCAug -5'
9357 5' -59.1 NC_002512.2 + 39177 0.67 0.82186
Target:  5'- aUGCUGauaaGCgGGCGUUGAGaCACGcgACu -3'
miRNA:   3'- gACGGCg---UGgCCGCAGCUC-GUGCa-UG- -5'
9357 5' -59.1 NC_002512.2 + 225091 0.67 0.821045
Target:  5'- gCUGCCGCagcaaccgucgcaACCGGCGcagcUCGAGgCGCa--- -3'
miRNA:   3'- -GACGGCG-------------UGGCCGC----AGCUC-GUGcaug -5'
9357 5' -59.1 NC_002512.2 + 158565 0.67 0.813637
Target:  5'- -gGCCGCucCUGGCG-CGAcagcGuCACGUACg -3'
miRNA:   3'- gaCGGCGu-GGCCGCaGCU----C-GUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 138963 0.67 0.813637
Target:  5'- -gGCCGCGCCGGCccCGuuCGCGgcCg -3'
miRNA:   3'- gaCGGCGUGGCCGcaGCucGUGCauG- -5'
9357 5' -59.1 NC_002512.2 + 130546 0.67 0.813637
Target:  5'- aUGCCGgACaGGCGgucCGAGacgACGUACa -3'
miRNA:   3'- gACGGCgUGgCCGCa--GCUCg--UGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 126773 0.67 0.813637
Target:  5'- -cGCgGCGgCGGCGgCGA-CGCGUGCc -3'
miRNA:   3'- gaCGgCGUgGCCGCaGCUcGUGCAUG- -5'
9357 5' -59.1 NC_002512.2 + 122084 0.67 0.813637
Target:  5'- gCUGCCGCacgcGCCGGaCG-CGAGguCG-GCg -3'
miRNA:   3'- -GACGGCG----UGGCC-GCaGCUCguGCaUG- -5'
9357 5' -59.1 NC_002512.2 + 182453 0.67 0.805264
Target:  5'- -cGCCGUGCgGGCGUgGuGCuCGUGg -3'
miRNA:   3'- gaCGGCGUGgCCGCAgCuCGuGCAUg -5'
9357 5' -59.1 NC_002512.2 + 171512 0.67 0.805264
Target:  5'- -gGCCGuCACCcucgaGGaCGUCGAGCGCa--- -3'
miRNA:   3'- gaCGGC-GUGG-----CC-GCAGCUCGUGcaug -5'
9357 5' -59.1 NC_002512.2 + 159341 0.67 0.805264
Target:  5'- -cGCCcguccuuuauGUAUCGGCGUCGGGguCGggGCg -3'
miRNA:   3'- gaCGG----------CGUGGCCGCAGCUCguGCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.