miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 3' -52.4 NC_002512.2 + 143 0.66 0.993217
Target:  5'- gGGGaGCCgggCGggGCGccgGCGgaGGAGCGcGCg -3'
miRNA:   3'- -CUC-CGGa--GCuuUGU---UGCa-CCUUGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 196448 0.66 0.993217
Target:  5'- cGGGGCCaUGGAAU-ACcUGGGcuGCGGCg -3'
miRNA:   3'- -CUCCGGaGCUUUGuUGcACCU--UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 229546 0.66 0.993217
Target:  5'- gGGGaGCCgggCGggGCGccgGCGgaGGAGCGcGCg -3'
miRNA:   3'- -CUC-CGGa--GCuuUGU---UGCa-CCUUGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 196379 0.66 0.993123
Target:  5'- cGGGCUcacuUCGGGACGccgcgggucuggcGCGgggacgcggGGGGCGGCg -3'
miRNA:   3'- cUCCGG----AGCUUUGU-------------UGCa--------CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 111698 0.66 0.993123
Target:  5'- -cGGCCUCGGggucgcgGAUGACGacGGAGucucCGGCg -3'
miRNA:   3'- cuCCGGAGCU-------UUGUUGCa-CCUU----GCCG- -5'
9358 3' -52.4 NC_002512.2 + 226778 0.66 0.992229
Target:  5'- cGAGGacguCUCGGgcGACGcCGUGGucuCGGCc -3'
miRNA:   3'- -CUCCg---GAGCU--UUGUuGCACCuu-GCCG- -5'
9358 3' -52.4 NC_002512.2 + 194327 0.66 0.992229
Target:  5'- -uGGCC-CGGGACGguuGCGUGGu-CGcGCa -3'
miRNA:   3'- cuCCGGaGCUUUGU---UGCACCuuGC-CG- -5'
9358 3' -52.4 NC_002512.2 + 94021 0.67 0.991582
Target:  5'- aGGGCCUCGuccgccagcuccucgGcgguGACGGCGaccgGGAAgGGCg -3'
miRNA:   3'- cUCCGGAGC---------------U----UUGUUGCa---CCUUgCCG- -5'
9358 3' -52.4 NC_002512.2 + 4270 0.67 0.991582
Target:  5'- aAGGCCUUaaaucugagccugcaGGAACAGauccacugGUGGAACGGa -3'
miRNA:   3'- cUCCGGAG---------------CUUUGUUg-------CACCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 95692 0.67 0.991128
Target:  5'- cGGGCCUC----CGGCG-GGGACGGg -3'
miRNA:   3'- cUCCGGAGcuuuGUUGCaCCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 220874 0.67 0.991128
Target:  5'- cGGGGCCUCGgcGCucuccauCGUGGccGACGa- -3'
miRNA:   3'- -CUCCGGAGCuuUGuu-----GCACC--UUGCcg -5'
9358 3' -52.4 NC_002512.2 + 160460 0.67 0.990894
Target:  5'- aAGGCCguuucgCGggGCAcgagcgcauguuCGUGGGuuccaucuccGCGGCg -3'
miRNA:   3'- cUCCGGa-----GCuuUGUu-----------GCACCU----------UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 111888 0.67 0.990894
Target:  5'- aGGGCCUCGAGGCAAUccagcaccccGAGCaGCa -3'
miRNA:   3'- cUCCGGAGCUUUGUUGcac-------CUUGcCG- -5'
9358 3' -52.4 NC_002512.2 + 117679 0.67 0.989909
Target:  5'- uGGGCUacgggUCGAcgAGCuGCGUGGcgcaccuGCGGCg -3'
miRNA:   3'- cUCCGG-----AGCU--UUGuUGCACCu------UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 124321 0.67 0.989909
Target:  5'- cGGGGCCgCGGcg-GACGUGcuGCGGCu -3'
miRNA:   3'- -CUCCGGaGCUuugUUGCACcuUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 219406 0.67 0.989909
Target:  5'- -cGGCC-CGccGCGACGcccacgcccGGGGCGGCg -3'
miRNA:   3'- cuCCGGaGCuuUGUUGCa--------CCUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 204869 0.67 0.988562
Target:  5'- gGAGGUCcgCGAccGACGGCGagcucucGGACGGCg -3'
miRNA:   3'- -CUCCGGa-GCU--UUGUUGCac-----CUUGCCG- -5'
9358 3' -52.4 NC_002512.2 + 221848 0.67 0.988562
Target:  5'- gGGGcGCCUCGGGACcggGACcucucGGAGCGGg -3'
miRNA:   3'- -CUC-CGGAGCUUUG---UUGca---CCUUGCCg -5'
9358 3' -52.4 NC_002512.2 + 184985 0.67 0.98708
Target:  5'- -cGGCCgu----CGACGUGGAgcgcuGCGGCc -3'
miRNA:   3'- cuCCGGagcuuuGUUGCACCU-----UGCCG- -5'
9358 3' -52.4 NC_002512.2 + 146889 0.67 0.98708
Target:  5'- gGAGGCC-CaGgcGCAGC-UGGAGgCGGCc -3'
miRNA:   3'- -CUCCGGaG-CuuUGUUGcACCUU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.