miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9358 5' -55.5 NC_002512.2 + 150683 0.67 0.951012
Target:  5'- gGGCGCGgcggucgcccCGACGGAccGUUggcucUCGGcGGCc -3'
miRNA:   3'- aUCGCGCaa--------GCUGCCU--CAA-----AGCC-CCG- -5'
9358 5' -55.5 NC_002512.2 + 224154 0.67 0.951012
Target:  5'- cGGaCGCGUgaGGCGGGGcg--GGGGCg -3'
miRNA:   3'- aUC-GCGCAagCUGCCUCaaagCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 226594 0.67 0.951012
Target:  5'- gGGCGCGgccCGGgGGAGga--GGGGa -3'
miRNA:   3'- aUCGCGCaa-GCUgCCUCaaagCCCCg -5'
9358 5' -55.5 NC_002512.2 + 132078 0.67 0.948158
Target:  5'- gAGCcCG-UCGACGGAGccggagcgcucggacCGGGGCu -3'
miRNA:   3'- aUCGcGCaAGCUGCCUCaaa------------GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 155059 0.67 0.946479
Target:  5'- gGGUcucCGUUCGcgcGCGGGGUcgugacgUUCGGGGUc -3'
miRNA:   3'- aUCGc--GCAAGC---UGCCUCA-------AAGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 108996 0.67 0.939408
Target:  5'- ---aGCGggCGACGGAGgagagggaccucgaGGGGCg -3'
miRNA:   3'- aucgCGCaaGCUGCCUCaaag----------CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 126739 0.67 0.938018
Target:  5'- cGGCGCGUgccucUUGGCccGAGacgccUCGGGGCg -3'
miRNA:   3'- aUCGCGCA-----AGCUGc-CUCaa---AGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 200092 0.67 0.938018
Target:  5'- -cGCGCccgUCG-CGGGGUcgcCGGGGUa -3'
miRNA:   3'- auCGCGca-AGCuGCCUCAaa-GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 200338 0.67 0.938018
Target:  5'- cGGCGUccuccugUCGGCGGAcGgggggaCGGGGCg -3'
miRNA:   3'- aUCGCGca-----AGCUGCCU-Caaa---GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 204981 0.67 0.938018
Target:  5'- -cGcCGCGggCGACGGGGaccggaaggCGGGGg -3'
miRNA:   3'- auC-GCGCaaGCUGCCUCaaa------GCCCCg -5'
9358 5' -55.5 NC_002512.2 + 170 0.67 0.937551
Target:  5'- gAGCGCGcgCcgggaggGACGGGGgcgagaaGGGGCc -3'
miRNA:   3'- aUCGCGCaaG-------CUGCCUCaaag---CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 229573 0.67 0.937551
Target:  5'- gAGCGCGcgCcgggaggGACGGGGgcgagaaGGGGCc -3'
miRNA:   3'- aUCGCGCaaG-------CUGCCUCaaag---CCCCG- -5'
9358 5' -55.5 NC_002512.2 + 217926 0.67 0.93324
Target:  5'- gUGGCccGCGUcuUCGugGGGac--CGGGGCg -3'
miRNA:   3'- -AUCG--CGCA--AGCugCCUcaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 99501 0.67 0.93324
Target:  5'- aGGCGUGccaGACGGGGUUggCGGccuGGCc -3'
miRNA:   3'- aUCGCGCaagCUGCCUCAAa-GCC---CCG- -5'
9358 5' -55.5 NC_002512.2 + 228070 0.67 0.932257
Target:  5'- cGGCGCGggagaCGACGGGcugcacacggUCGGGaGCg -3'
miRNA:   3'- aUCGCGCaa---GCUGCCUcaa-------AGCCC-CG- -5'
9358 5' -55.5 NC_002512.2 + 89431 0.68 0.928236
Target:  5'- -cGgGCG-UCGGCGGGGUcacgUCcGGGCc -3'
miRNA:   3'- auCgCGCaAGCUGCCUCAa---AGcCCCG- -5'
9358 5' -55.5 NC_002512.2 + 95781 0.68 0.928236
Target:  5'- gGGgGCGUcCGAgCGGuAGgcgcCGGGGCg -3'
miRNA:   3'- aUCgCGCAaGCU-GCC-UCaaa-GCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 223097 0.68 0.928236
Target:  5'- cGGCuGCG-UCGACGGGGa---GGGGg -3'
miRNA:   3'- aUCG-CGCaAGCUGCCUCaaagCCCCg -5'
9358 5' -55.5 NC_002512.2 + 74284 0.68 0.928236
Target:  5'- --aCGCGUUcCGACGGG----UGGGGCg -3'
miRNA:   3'- aucGCGCAA-GCUGCCUcaaaGCCCCG- -5'
9358 5' -55.5 NC_002512.2 + 196405 0.68 0.919758
Target:  5'- cUGGCGCGgggacgcggggggCGGCGGccgGGUcgggagaggUCGGGGCc -3'
miRNA:   3'- -AUCGCGCaa-----------GCUGCC---UCAa--------AGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.