miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 3' -60.2 NC_002512.2 + 90094 0.66 0.846926
Target:  5'- gCCCCCGCC--GGCcuggaGGgugCGCCGGa -3'
miRNA:   3'- -GGGGGCGGagUCGaagg-CUa--GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 225214 0.66 0.846926
Target:  5'- gUCCCuCCUgGGCUU-CGAcgCGCCGGc -3'
miRNA:   3'- gGGGGcGGAgUCGAAgGCUa-GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 227809 0.66 0.846926
Target:  5'- gCUCCCGCC-CGGCguggacUCCGcgcuccCGCUGGc -3'
miRNA:   3'- -GGGGGCGGaGUCGa-----AGGCua----GCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 174254 0.66 0.846926
Target:  5'- uCCCUCGCC-CGGg-UCCGgGUC-CCGGg -3'
miRNA:   3'- -GGGGGCGGaGUCgaAGGC-UAGcGGCC- -5'
9359 3' -60.2 NC_002512.2 + 225461 0.66 0.846926
Target:  5'- aCCCCGCCggucuacCAGCagCCGccGUCGaCCGc -3'
miRNA:   3'- gGGGGCGGa------GUCGaaGGC--UAGC-GGCc -5'
9359 3' -60.2 NC_002512.2 + 224880 0.67 0.831727
Target:  5'- uUCCCGCCUCGccggccGCcUUCGAcccguUCGCCGu -3'
miRNA:   3'- gGGGGCGGAGU------CGaAGGCU-----AGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 176265 0.67 0.831727
Target:  5'- cUCCCCGCCgacgaUCcGCUUCgGGUCcaggGCCuGGa -3'
miRNA:   3'- -GGGGGCGG-----AGuCGAAGgCUAG----CGG-CC- -5'
9359 3' -60.2 NC_002512.2 + 171975 0.67 0.831727
Target:  5'- uCCUCgCGCuCUUAGUccugCUGAUCGCCGu -3'
miRNA:   3'- -GGGG-GCG-GAGUCGaa--GGCUAGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 189783 0.67 0.83095
Target:  5'- cCUCCCGCCguacgaGGCUcugucucUCCGAUC-CgGGg -3'
miRNA:   3'- -GGGGGCGGag----UCGA-------AGGCUAGcGgCC- -5'
9359 3' -60.2 NC_002512.2 + 157052 0.67 0.82861
Target:  5'- aCCCCgGCaa-GGCgggcgucccggggUCCGGggUCGCCGGc -3'
miRNA:   3'- -GGGGgCGgagUCGa------------AGGCU--AGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 146608 0.67 0.823889
Target:  5'- gCCCCagaCGCCUCuGCUgCCGAcgaucCGCCa- -3'
miRNA:   3'- -GGGG---GCGGAGuCGAaGGCUa----GCGGcc -5'
9359 3' -60.2 NC_002512.2 + 117129 0.67 0.823889
Target:  5'- gCCCCGUCggCGGCgUUCGAgUCGCUGc -3'
miRNA:   3'- gGGGGCGGa-GUCGaAGGCU-AGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 223447 0.67 0.823889
Target:  5'- aCCCCUGUCUCGGCgcccgCCaGAcgGCCGc -3'
miRNA:   3'- -GGGGGCGGAGUCGaa---GG-CUagCGGCc -5'
9359 3' -60.2 NC_002512.2 + 150696 0.67 0.823097
Target:  5'- gCCCCGacggaccguuggcUCUCGGCggCCGAcCGuuGGa -3'
miRNA:   3'- gGGGGC-------------GGAGUCGaaGGCUaGCggCC- -5'
9359 3' -60.2 NC_002512.2 + 171382 0.67 0.821508
Target:  5'- gCUCCGCCU--GUUUcgucuucaagaacaCCGGUUGCCGGg -3'
miRNA:   3'- gGGGGCGGAguCGAA--------------GGCUAGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 129672 0.67 0.815901
Target:  5'- aCgCCGCCUCgacGGCguagcCCGAaUCGCCGu -3'
miRNA:   3'- gGgGGCGGAG---UCGaa---GGCU-AGCGGCc -5'
9359 3' -60.2 NC_002512.2 + 96584 0.67 0.815901
Target:  5'- cCUCCCGCCUCGGggUCCucuGGggaCCGGa -3'
miRNA:   3'- -GGGGGCGGAGUCgaAGG---CUagcGGCC- -5'
9359 3' -60.2 NC_002512.2 + 77137 0.67 0.815901
Target:  5'- aCCUCGCCgUCGGgggacCUUCCGAcCGCCc- -3'
miRNA:   3'- gGGGGCGG-AGUC-----GAAGGCUaGCGGcc -5'
9359 3' -60.2 NC_002512.2 + 202948 0.67 0.815901
Target:  5'- gCUCCGCCgccgguacgaggUCAGUUUCaGG-CGCCGGu -3'
miRNA:   3'- gGGGGCGG------------AGUCGAAGgCUaGCGGCC- -5'
9359 3' -60.2 NC_002512.2 + 146172 0.67 0.815901
Target:  5'- uCCCgCUGCCgcgCGGCa--CGGUCGCCcuGGg -3'
miRNA:   3'- -GGG-GGCGGa--GUCGaagGCUAGCGG--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.