miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9359 5' -54 NC_002512.2 + 227 0.67 0.968941
Target:  5'- -aCCGAAGGGCaGGcGGGcGGGAaAAGGg -3'
miRNA:   3'- caGGCUUCUUG-CCuCCU-CCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 229630 0.67 0.968941
Target:  5'- -aCCGAAGGGCaGGcGGGcGGGAaAAGGg -3'
miRNA:   3'- caGGCUUCUUG-CCuCCU-CCCUcUUCC- -5'
9359 5' -54 NC_002512.2 + 149605 0.68 0.959243
Target:  5'- --aCGAGGAcaugcGCGGGGGAGaguccGGGGAGGa -3'
miRNA:   3'- cagGCUUCU-----UGCCUCCUCc----CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 224230 0.68 0.959243
Target:  5'- uUCCaGAucuuuaauGAGCGGGGGAGGcGGGucGGc -3'
miRNA:   3'- cAGG-CUu-------CUUGCCUCCUCC-CUCuuCC- -5'
9359 5' -54 NC_002512.2 + 228261 0.68 0.955594
Target:  5'- --gCGggGGcgacugaccGCGGAccgGGuGGGAGAGGGa -3'
miRNA:   3'- cagGCuuCU---------UGCCU---CCuCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 103684 0.68 0.955594
Target:  5'- cGUCgcaGAGGGcgGCGGAcgcGGcGGGAGggGGc -3'
miRNA:   3'- -CAGg--CUUCU--UGCCU---CCuCCCUCuuCC- -5'
9359 5' -54 NC_002512.2 + 226587 0.68 0.951729
Target:  5'- -gCCaGGAGGGCGcGGcccGGGGGAGGAGGg -3'
miRNA:   3'- caGG-CUUCUUGC-CUc--CUCCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 75780 0.68 0.951729
Target:  5'- -cCCGGgaggacggggcAGAGCGGGGGAGcGGuaAGAAGa -3'
miRNA:   3'- caGGCU-----------UCUUGCCUCCUC-CC--UCUUCc -5'
9359 5' -54 NC_002512.2 + 150302 0.68 0.951729
Target:  5'- --gCGAAGAgGCGGAGGAGcGAGAccggcggcgAGGa -3'
miRNA:   3'- cagGCUUCU-UGCCUCCUCcCUCU---------UCC- -5'
9359 5' -54 NC_002512.2 + 130401 0.69 0.947644
Target:  5'- -gCCGGAGAcgACGGAGGAGccccAGAAGa -3'
miRNA:   3'- caGGCUUCU--UGCCUCCUCcc--UCUUCc -5'
9359 5' -54 NC_002512.2 + 213834 0.69 0.943337
Target:  5'- aGUCuCGAGGcGCGGcGcGGGGAGAAGa -3'
miRNA:   3'- -CAG-GCUUCuUGCCuCcUCCCUCUUCc -5'
9359 5' -54 NC_002512.2 + 222324 0.69 0.943337
Target:  5'- -aCCGGAGGcuGCGGcggcgccuccAGGA-GGAGGAGGa -3'
miRNA:   3'- caGGCUUCU--UGCC----------UCCUcCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 149560 0.69 0.943337
Target:  5'- --gCGAGGAggacACGGAgGGAGaGGAGggGa -3'
miRNA:   3'- cagGCUUCU----UGCCU-CCUC-CCUCuuCc -5'
9359 5' -54 NC_002512.2 + 194710 0.69 0.943337
Target:  5'- -aCUGGAGGacGCGGAGGGGGGcgcGGcuGGu -3'
miRNA:   3'- caGGCUUCU--UGCCUCCUCCC---UCuuCC- -5'
9359 5' -54 NC_002512.2 + 229194 0.69 0.943337
Target:  5'- ---aGAAGAGCGGA-GAGGGAaagagcggagaGAGGGg -3'
miRNA:   3'- caggCUUCUUGCCUcCUCCCU-----------CUUCC- -5'
9359 5' -54 NC_002512.2 + 191284 0.69 0.938806
Target:  5'- --aCGggGAgggcgGCGGGGcGGGGGAcGggGGc -3'
miRNA:   3'- cagGCuuCU-----UGCCUC-CUCCCU-CuuCC- -5'
9359 5' -54 NC_002512.2 + 130974 0.69 0.938806
Target:  5'- aUCgGGAGAccuCGGAGGAGGaGAucGGGc -3'
miRNA:   3'- cAGgCUUCUu--GCCUCCUCC-CUcuUCC- -5'
9359 5' -54 NC_002512.2 + 122767 0.69 0.938806
Target:  5'- -gCCGGAGGACgaGGAcGAGGacGAGGAGGa -3'
miRNA:   3'- caGGCUUCUUG--CCUcCUCC--CUCUUCC- -5'
9359 5' -54 NC_002512.2 + 228879 0.69 0.934048
Target:  5'- -aCCGGAGGccgggcgaguggAUGaGAGGAcGGAGAAGGa -3'
miRNA:   3'- caGGCUUCU------------UGC-CUCCUcCCUCUUCC- -5'
9359 5' -54 NC_002512.2 + 212601 0.69 0.929063
Target:  5'- uGUCCGGAGAcgaGGAGGAcgacgaggacGcGGAcGAGGGg -3'
miRNA:   3'- -CAGGCUUCUug-CCUCCU----------C-CCU-CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.