miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9360 5' -55.6 NC_002512.2 + 187648 0.67 0.909276
Target:  5'- cAUGGAGGGcGGCGGCcacggucacGGUCacgGCGGCGGg -3'
miRNA:   3'- -UAUCUCCUcCCGUCG---------UCAG---CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 225124 0.67 0.909276
Target:  5'- -----cGAGGcGCAGCAGUUGCcACAGc -3'
miRNA:   3'- uaucucCUCC-CGUCGUCAGCGuUGUC- -5'
9360 5' -55.6 NC_002512.2 + 128814 0.67 0.903129
Target:  5'- -gAGAGGucGGCGGCGG-CGCuguCGGc -3'
miRNA:   3'- uaUCUCCucCCGUCGUCaGCGuu-GUC- -5'
9360 5' -55.6 NC_002512.2 + 144079 0.68 0.890143
Target:  5'- uGUAGAc--GGGCAGCAGgCGCAAUAa -3'
miRNA:   3'- -UAUCUccuCCCGUCGUCaGCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 121382 0.68 0.890143
Target:  5'- -gAGAGGAGGGCGaCGGcCG-GACGGa -3'
miRNA:   3'- uaUCUCCUCCCGUcGUCaGCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 217718 0.68 0.883311
Target:  5'- --cGAGGuccgcuucaGGGGCGGCAGggacCGCGACu- -3'
miRNA:   3'- uauCUCC---------UCCCGUCGUCa---GCGUUGuc -5'
9360 5' -55.6 NC_002512.2 + 104639 0.68 0.882616
Target:  5'- -aGGGGGAGGGCGGCgcgaacgAGggCGCGAa-- -3'
miRNA:   3'- uaUCUCCUCCCGUCG-------UCa-GCGUUguc -5'
9360 5' -55.6 NC_002512.2 + 157133 0.68 0.876258
Target:  5'- -cGGGGGucGGCGGCGGgccCGgGGCGGg -3'
miRNA:   3'- uaUCUCCucCCGUCGUCa--GCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 226607 0.68 0.86899
Target:  5'- -gGGAGGAGGGgaCGGCGacgcaGCGACGGg -3'
miRNA:   3'- uaUCUCCUCCC--GUCGUcag--CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 129294 0.68 0.86899
Target:  5'- -gGGGGGAGGGagcaCGGCGGagGgAACGGg -3'
miRNA:   3'- uaUCUCCUCCC----GUCGUCagCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 227545 0.69 0.835405
Target:  5'- -gGGAGGAGGGCggguccgcgaccgaGGCcuccggaccgccGG-CGCAGCAGa -3'
miRNA:   3'- uaUCUCCUCCCG--------------UCG------------UCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 130786 0.69 0.829603
Target:  5'- --cGAGGAGGGCcGCcGacgCGCAGCAc -3'
miRNA:   3'- uauCUCCUCCCGuCGuCa--GCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 228966 0.69 0.821164
Target:  5'- -gGGGcGGAGGGCGGgAGaCGgAGCAGa -3'
miRNA:   3'- uaUCU-CCUCCCGUCgUCaGCgUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 166216 0.69 0.821164
Target:  5'- --cGAGGAGGGCcGCGcgCGCGugGGg -3'
miRNA:   3'- uauCUCCUCCCGuCGUcaGCGUugUC- -5'
9360 5' -55.6 NC_002512.2 + 150673 0.7 0.776574
Target:  5'- --cGAGGuccgcGGGcGCGGCGGUCGCcccGACGGa -3'
miRNA:   3'- uauCUCC-----UCC-CGUCGUCAGCG---UUGUC- -5'
9360 5' -55.6 NC_002512.2 + 205392 0.7 0.767237
Target:  5'- ---cAGGAaGGCGGCGG-CGCAGCGGa -3'
miRNA:   3'- uaucUCCUcCCGUCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 192094 0.7 0.766297
Target:  5'- -cAGAGcGAGGGCGGC-GUCauguuccacgggaGCGACAGc -3'
miRNA:   3'- uaUCUC-CUCCCGUCGuCAG-------------CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 170809 0.71 0.747253
Target:  5'- -gAGGGGAgcgacggGGGCGGCAG-CGgCGGCAGc -3'
miRNA:   3'- uaUCUCCU-------CCCGUCGUCaGC-GUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 227616 0.71 0.738548
Target:  5'- -cGGAGGGcGGGCGGCggcggcgaGGUCagGCGACGGa -3'
miRNA:   3'- uaUCUCCU-CCCGUCG--------UCAG--CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 123048 0.71 0.728789
Target:  5'- -aGGAGGAGgcgauGGCGGaagaggaGGUCGCGGCGGc -3'
miRNA:   3'- uaUCUCCUC-----CCGUCg------UCAGCGUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.