miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9361 5' -56.4 NC_002512.2 + 186954 0.68 0.911322
Target:  5'- uGGCGGagaucccccgcUCCCgGGcCGUCCUGgcGGUGc -3'
miRNA:   3'- -CCGCU-----------AGGGaCCaGCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 204311 0.68 0.911322
Target:  5'- aGCGAUCCgCUGGUCGUCgCCc------ -3'
miRNA:   3'- cCGCUAGG-GACCAGCAG-GGcuuucgc -5'
9361 5' -56.4 NC_002512.2 + 148808 0.68 0.905492
Target:  5'- cGGCaccGUCUC-GGagcUCGUCCUGggGGCGg -3'
miRNA:   3'- -CCGc--UAGGGaCC---AGCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 132741 0.68 0.905492
Target:  5'- aGGCGcagCgCgGcGUCGUCCCGcAGGCGg -3'
miRNA:   3'- -CCGCua-GgGaC-CAGCAGGGCuUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 126372 0.68 0.905492
Target:  5'- -aCGGUCCuCUGGcCG-CCCGGgaGAGCGc -3'
miRNA:   3'- ccGCUAGG-GACCaGCaGGGCU--UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 108106 0.68 0.905492
Target:  5'- cGGCG-UCCCcgccucggcGGUCcgcgGUCCCGAGAGgCGc -3'
miRNA:   3'- -CCGCuAGGGa--------CCAG----CAGGGCUUUC-GC- -5'
9361 5' -56.4 NC_002512.2 + 151546 0.68 0.899446
Target:  5'- aGgGGUCCCgucccGGUCucgccuUCCCGAGAGCc -3'
miRNA:   3'- cCgCUAGGGa----CCAGc-----AGGGCUUUCGc -5'
9361 5' -56.4 NC_002512.2 + 204794 0.68 0.893188
Target:  5'- aGGaGAcgCCCgggaGGUccgCGUCCCGggGGCGc -3'
miRNA:   3'- -CCgCUa-GGGa---CCA---GCAGGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 186835 0.68 0.893188
Target:  5'- cGGCGAggCCCUGcG-CGUCgCCGAGGaccuGCGc -3'
miRNA:   3'- -CCGCUa-GGGAC-CaGCAG-GGCUUU----CGC- -5'
9361 5' -56.4 NC_002512.2 + 153057 0.68 0.893188
Target:  5'- aGCGGUCCCcGGUCGggUCGGcggucgAGGCGg -3'
miRNA:   3'- cCGCUAGGGaCCAGCagGGCU------UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 207656 0.68 0.886721
Target:  5'- cGGCGG-CCgUGGUggCGUCCCG--GGCu -3'
miRNA:   3'- -CCGCUaGGgACCA--GCAGGGCuuUCGc -5'
9361 5' -56.4 NC_002512.2 + 132428 0.69 0.858831
Target:  5'- cGGCGAUCCagaaccGGUUGcgcucCCCGgcGGCGg -3'
miRNA:   3'- -CCGCUAGGga----CCAGCa----GGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 200730 0.69 0.858831
Target:  5'- cGGCGGUCCgaacgGGUCGUaCCGGgcGUGg -3'
miRNA:   3'- -CCGCUAGGga---CCAGCAgGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 102474 0.7 0.835927
Target:  5'- gGGCGcgCCCgucgcGGUggcgGUCCCGcAGGCGg -3'
miRNA:   3'- -CCGCuaGGGa----CCAg---CAGGGCuUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 223944 0.7 0.835927
Target:  5'- aGGuCGAUCCCUGGggacgGUUCCGGc-GCGa -3'
miRNA:   3'- -CC-GCUAGGGACCag---CAGGGCUuuCGC- -5'
9361 5' -56.4 NC_002512.2 + 169017 0.7 0.827945
Target:  5'- cGGCGAUCCgggcgGG-CGUCCgCGAGcGGCGc -3'
miRNA:   3'- -CCGCUAGGga---CCaGCAGG-GCUU-UCGC- -5'
9361 5' -56.4 NC_002512.2 + 92832 0.7 0.811497
Target:  5'- cGGCGccuccUCCCUGGcCGUCcCCGGucGGCc -3'
miRNA:   3'- -CCGCu----AGGGACCaGCAG-GGCUu-UCGc -5'
9361 5' -56.4 NC_002512.2 + 157112 0.7 0.803045
Target:  5'- cGGCGAcgUCCCUcccggcgucgggGGUCGgcggcgggCCCGGggcGGGCGg -3'
miRNA:   3'- -CCGCU--AGGGA------------CCAGCa-------GGGCU---UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 215155 0.71 0.776871
Target:  5'- aGGCGAcgagCaCCUGGcCGUCCUgcugcucgGGGAGCGg -3'
miRNA:   3'- -CCGCUa---G-GGACCaGCAGGG--------CUUUCGC- -5'
9361 5' -56.4 NC_002512.2 + 184758 0.71 0.758815
Target:  5'- cGGCGGgcggCCCgUGGUCGUcgacCCCGAGGacGUGg -3'
miRNA:   3'- -CCGCUa---GGG-ACCAGCA----GGGCUUU--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.