miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 212427 0.73 0.585974
Target:  5'- -cGGGAGGU-CGAguucgGGCCGGcCGGCCGCg -3'
miRNA:   3'- caCUCUUCGuGCU-----CCGGUC-GCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 92522 0.73 0.585974
Target:  5'- -gGAGAccGCGCGGaucuacccGGCCgcGGCGGCCGCg -3'
miRNA:   3'- caCUCUu-CGUGCU--------CCGG--UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 201784 0.72 0.605682
Target:  5'- gGUGAG-AGCGCGgacGGGgCGGCGACCu- -3'
miRNA:   3'- -CACUCuUCGUGC---UCCgGUCGCUGGcg -5'
9362 5' -57.3 NC_002512.2 + 90632 0.72 0.605682
Target:  5'- -cGGGcGGCGCGAcccGGCgCcGCGGCCGCg -3'
miRNA:   3'- caCUCuUCGUGCU---CCG-GuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 126758 0.72 0.605682
Target:  5'- -cGAGAcGCcuCGGGGCgCGGCGGCgGCg -3'
miRNA:   3'- caCUCUuCGu-GCUCCG-GUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 170810 0.72 0.615568
Target:  5'- -aGGGGAGCgACGGGGgcggCAGCGGCgGCa -3'
miRNA:   3'- caCUCUUCG-UGCUCCg---GUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 149149 0.72 0.635366
Target:  5'- -cGGGAccgcCGCGGGGCCGGUG-CCGCc -3'
miRNA:   3'- caCUCUuc--GUGCUCCGGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 211770 0.72 0.645265
Target:  5'- -cGGGAGGacgugGAGGCCcgGGUGGCCGCg -3'
miRNA:   3'- caCUCUUCgug--CUCCGG--UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 119709 0.72 0.655155
Target:  5'- -cGAGAAGCGgcCGGccGGCCGuGCGcCCGCa -3'
miRNA:   3'- caCUCUUCGU--GCU--CCGGU-CGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 81926 0.71 0.665028
Target:  5'- cGUGAcGAcGaaaccgaGCGAGGCCucgucGGCGGCCGCc -3'
miRNA:   3'- -CACU-CUuCg------UGCUCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 129863 0.71 0.665028
Target:  5'- -gGAGGAGCcccuUGAGGCCGcacgcgacGCGGCCGa -3'
miRNA:   3'- caCUCUUCGu---GCUCCGGU--------CGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 146713 0.71 0.674875
Target:  5'- -gGAGAcGacgGCGGGG-CGGCGGCCGCg -3'
miRNA:   3'- caCUCUuCg--UGCUCCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 148504 0.71 0.68469
Target:  5'- -gGGGAcgGGgACGAGGa-GGCGGCCGCc -3'
miRNA:   3'- caCUCU--UCgUGCUCCggUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 196282 0.71 0.691537
Target:  5'- -gGGGAAGgAaucgcugaugcgggUGAGGacCCAGCGGCCGCg -3'
miRNA:   3'- caCUCUUCgU--------------GCUCC--GGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 222402 0.71 0.693489
Target:  5'- ---uGGAGCGCcgcggcuucggcgGGGGCCGGCaGCCGCg -3'
miRNA:   3'- cacuCUUCGUG-------------CUCCGGUCGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 227671 0.71 0.694464
Target:  5'- -aGAGcGGCgGCGccGCCGGCGACCGa -3'
miRNA:   3'- caCUCuUCG-UGCucCGGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 96627 0.71 0.694464
Target:  5'- -gGGGGAGgGCGAGGaaaCcGCGACCGg -3'
miRNA:   3'- caCUCUUCgUGCUCCg--GuCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 158847 0.71 0.698361
Target:  5'- -gGGGGAGCGgggggacgucgucguCGAccGGCCGGCGGCgGCc -3'
miRNA:   3'- caCUCUUCGU---------------GCU--CCGGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 221295 0.71 0.70419
Target:  5'- -gGGGAGGC-CGGGGUCGGCGGggaGCg -3'
miRNA:   3'- caCUCUUCGuGCUCCGGUCGCUgg-CG- -5'
9362 5' -57.3 NC_002512.2 + 128801 0.71 0.70419
Target:  5'- -cGGGGucuucAGCGaGAGGUCGGCGGCgGCg -3'
miRNA:   3'- caCUCU-----UCGUgCUCCGGUCGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.