miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 197844 0.66 0.919487
Target:  5'- -cGAGGggcGGCGgGAGGCCcucuucaacCGACUGCg -3'
miRNA:   3'- caCUCU---UCGUgCUCCGGuc-------GCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 215050 0.66 0.919487
Target:  5'- -cGAGGAGCucacCGucGUCGGCGgcgucuACCGCg -3'
miRNA:   3'- caCUCUUCGu---GCucCGGUCGC------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 145088 0.66 0.919487
Target:  5'- -cGAGuucCGCGAGGCgucGCGGCUGCc -3'
miRNA:   3'- caCUCuucGUGCUCCGgu-CGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 228751 0.66 0.918939
Target:  5'- aGUGAGAgagggagGGCG-GAGGa-GGCGACCGa -3'
miRNA:   3'- -CACUCU-------UCGUgCUCCggUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 198136 0.66 0.916171
Target:  5'- uUGGcGAAGCGCGAgccccgcgcgggccgGGUCGGCG-CCGg -3'
miRNA:   3'- cACU-CUUCGUGCU---------------CCGGUCGCuGGCg -5'
9362 5' -57.3 NC_002512.2 + 166465 0.66 0.913915
Target:  5'- -cGGGcucGAGgGCGGGGaCGGCggGACCGCg -3'
miRNA:   3'- caCUC---UUCgUGCUCCgGUCG--CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 226869 0.66 0.913915
Target:  5'- -aGGGAGGCccGgGAGGCCAGgaaGGCC-Cg -3'
miRNA:   3'- caCUCUUCG--UgCUCCGGUCg--CUGGcG- -5'
9362 5' -57.3 NC_002512.2 + 82391 0.66 0.913915
Target:  5'- -gGAGAAGCGCc-GGUcgcgcccguccgCAGCGcCCGCg -3'
miRNA:   3'- caCUCUUCGUGcuCCG------------GUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 98129 0.66 0.913915
Target:  5'- -cGGGgcGCugGucGUC-GCGGCCGCc -3'
miRNA:   3'- caCUCuuCGugCucCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 101422 0.66 0.913915
Target:  5'- -cGAG-GGCacaGCGGcGGCCGGCGG-CGCg -3'
miRNA:   3'- caCUCuUCG---UGCU-CCGGUCGCUgGCG- -5'
9362 5' -57.3 NC_002512.2 + 201649 0.66 0.913915
Target:  5'- ---cGcGGCGCGAcGGCCc-CGGCCGCg -3'
miRNA:   3'- cacuCuUCGUGCU-CCGGucGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 108688 0.66 0.913915
Target:  5'- -cGAG-GGCGCugucGGCCAGCGcCCGg -3'
miRNA:   3'- caCUCuUCGUGcu--CCGGUCGCuGGCg -5'
9362 5' -57.3 NC_002512.2 + 149378 0.66 0.913915
Target:  5'- -cGAG-GGCGCGGGGacgcaggacuCCGGCuccucgacgGGCCGCg -3'
miRNA:   3'- caCUCuUCGUGCUCC----------GGUCG---------CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 133822 0.66 0.913346
Target:  5'- -cGAGAcGGC-CGAGucguaccGCCGGCGcuuCCGCg -3'
miRNA:   3'- caCUCU-UCGuGCUC-------CGGUCGCu--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 181024 0.66 0.912774
Target:  5'- -aGGGAggcccgcguccugGGCAgGAGGCCGcacagccggcaguGCG-CCGCg -3'
miRNA:   3'- caCUCU-------------UCGUgCUCCGGU-------------CGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 194274 0.66 0.908122
Target:  5'- -cGAGGAGUggaagAUGGcGGCCAGCGuuCCGa -3'
miRNA:   3'- caCUCUUCG-----UGCU-CCGGUCGCu-GGCg -5'
9362 5' -57.3 NC_002512.2 + 190529 0.66 0.908122
Target:  5'- -cGAGcuGguCGGGGCgAGgGACCGg -3'
miRNA:   3'- caCUCuuCguGCUCCGgUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 150967 0.66 0.908122
Target:  5'- -gGAGGcgGGCucGCGucGCCauGGUGACCGCu -3'
miRNA:   3'- caCUCU--UCG--UGCucCGG--UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 125134 0.66 0.908122
Target:  5'- -cGGGAcgacGGCgACGAGGaCGGCGAC-GCg -3'
miRNA:   3'- caCUCU----UCG-UGCUCCgGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 124755 0.66 0.908122
Target:  5'- -cGuGGAGCcguCGucGGcCCAGaCGACCGCg -3'
miRNA:   3'- caCuCUUCGu--GCu-CC-GGUC-GCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.