miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 96627 0.71 0.694464
Target:  5'- -gGGGGAGgGCGAGGaaaCcGCGACCGg -3'
miRNA:   3'- caCUCUUCgUGCUCCg--GuCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 97847 0.67 0.902108
Target:  5'- -gGGGAAGCG-GAGGCgA-CGACCGa -3'
miRNA:   3'- caCUCUUCGUgCUCCGgUcGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 98129 0.66 0.913915
Target:  5'- -cGGGgcGCugGucGUC-GCGGCCGCc -3'
miRNA:   3'- caCUCuuCGugCucCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 100746 0.67 0.882092
Target:  5'- cGUGGGGcccguuguacuGCGCGAGGCUguAGUcgcagagGACCGCc -3'
miRNA:   3'- -CACUCUu----------CGUGCUCCGG--UCG-------CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 101422 0.66 0.913915
Target:  5'- -cGAG-GGCacaGCGGcGGCCGGCGG-CGCg -3'
miRNA:   3'- caCUCuUCG---UGCU-CCGGUCGCUgGCG- -5'
9362 5' -57.3 NC_002512.2 + 102513 0.7 0.723461
Target:  5'- -cGGGGAGgACGAggaggaGGCCagGGCGACgGCg -3'
miRNA:   3'- caCUCUUCgUGCU------CCGG--UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 103466 0.67 0.895876
Target:  5'- -cGAGGA-CGCGgcucGGGUCucggcGGCGGCCGCg -3'
miRNA:   3'- caCUCUUcGUGC----UCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 103756 0.68 0.846444
Target:  5'- -aGAGgcGCuACGAGGagaucucgaaCCGGCGAcaCCGCc -3'
miRNA:   3'- caCUCuuCG-UGCUCC----------GGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 105220 0.7 0.751797
Target:  5'- -cGAGcuGAGCGCGaAGGCguaCAGCGugagcGCCGCg -3'
miRNA:   3'- caCUC--UUCGUGC-UCCG---GUCGC-----UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 105643 0.7 0.723461
Target:  5'- -cGAGAcccGGC-CGAGGUagGGCGAgCCGCa -3'
miRNA:   3'- caCUCU---UCGuGCUCCGg-UCGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 105940 0.67 0.901495
Target:  5'- -cGAGGgucccgccGGCACGAgucugacGGCCAGCccGCCGUc -3'
miRNA:   3'- caCUCU--------UCGUGCU-------CCGGUCGc-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 108425 0.66 0.919487
Target:  5'- cUGcGccGCcCGGGGCCGGgGGCCGg -3'
miRNA:   3'- cACuCuuCGuGCUCCGGUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 108688 0.66 0.913915
Target:  5'- -cGAG-GGCGCugucGGCCAGCGcCCGg -3'
miRNA:   3'- caCUCuUCGUGcu--CCGGUCGCuGGCg -5'
9362 5' -57.3 NC_002512.2 + 110091 0.66 0.924835
Target:  5'- -----uGGCGCaGAGGCCGGUGcaGCUGCu -3'
miRNA:   3'- cacucuUCGUG-CUCCGGUCGC--UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 110487 0.66 0.929959
Target:  5'- -cGAGcagcGGCACGcGGCCcugcAGCagGGCCGCc -3'
miRNA:   3'- caCUCu---UCGUGCuCCGG----UCG--CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 110887 0.66 0.908122
Target:  5'- --aGGAGGCGCuuggcgGAGGCCAGCcGCagGCa -3'
miRNA:   3'- cacUCUUCGUG------CUCCGGUCGcUGg-CG- -5'
9362 5' -57.3 NC_002512.2 + 111163 0.69 0.779245
Target:  5'- uUGAacAGCACGucGCCGGCGAgCgGCa -3'
miRNA:   3'- cACUcuUCGUGCucCGGUCGCU-GgCG- -5'
9362 5' -57.3 NC_002512.2 + 112338 0.67 0.902108
Target:  5'- uUGAGGAGCAcguucuCGAGcGCCAGC--CCGg -3'
miRNA:   3'- cACUCUUCGU------GCUC-CGGUCGcuGGCg -5'
9362 5' -57.3 NC_002512.2 + 113061 0.67 0.889429
Target:  5'- -gGAGccGCACGAgGGCCAGgCGGUCGa -3'
miRNA:   3'- caCUCuuCGUGCU-CCGGUC-GCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 113137 0.69 0.814079
Target:  5'- -gGAGAccgcGCGCGGGgcGCCGGCcucGCCGCg -3'
miRNA:   3'- caCUCUu---CGUGCUC--CGGUCGc--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.