miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 196282 0.71 0.691537
Target:  5'- -gGGGAAGgAaucgcugaugcgggUGAGGacCCAGCGGCCGCg -3'
miRNA:   3'- caCUCUUCgU--------------GCUCC--GGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 96627 0.71 0.694464
Target:  5'- -gGGGGAGgGCGAGGaaaCcGCGACCGg -3'
miRNA:   3'- caCUCUUCgUGCUCCg--GuCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 148504 0.71 0.68469
Target:  5'- -gGGGAcgGGgACGAGGa-GGCGGCCGCc -3'
miRNA:   3'- caCUCU--UCgUGCUCCggUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146713 0.71 0.674875
Target:  5'- -gGAGAcGacgGCGGGG-CGGCGGCCGCg -3'
miRNA:   3'- caCUCUuCg--UGCUCCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 129863 0.71 0.665028
Target:  5'- -gGAGGAGCcccuUGAGGCCGcacgcgacGCGGCCGa -3'
miRNA:   3'- caCUCUUCGu---GCUCCGGU--------CGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 81926 0.71 0.665028
Target:  5'- cGUGAcGAcGaaaccgaGCGAGGCCucgucGGCGGCCGCc -3'
miRNA:   3'- -CACU-CUuCg------UGCUCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 173042 0.7 0.761056
Target:  5'- -gGGGggGUguACGAGGCCAuccucuGCGACaacuGCg -3'
miRNA:   3'- caCUCuuCG--UGCUCCGGU------CGCUGg---CG- -5'
9362 5' -57.3 NC_002512.2 + 226478 0.7 0.761056
Target:  5'- --aGGAGGC-CGGGGCCcgGGCGcuccccucGCCGCg -3'
miRNA:   3'- cacUCUUCGuGCUCCGG--UCGC--------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 164511 0.7 0.761056
Target:  5'- -gGGGAAGCGCGguaacgugaccaAGGgCGGCGAUgaCGCg -3'
miRNA:   3'- caCUCUUCGUGC------------UCCgGUCGCUG--GCG- -5'
9362 5' -57.3 NC_002512.2 + 195090 0.7 0.751797
Target:  5'- -cGAGggGU-CGAGGCCgaGGgGAUUGCg -3'
miRNA:   3'- caCUCuuCGuGCUCCGG--UCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113265 0.7 0.751797
Target:  5'- -cGAGggGgGC--GGCCGGCGgggcaGCCGCg -3'
miRNA:   3'- caCUCuuCgUGcuCCGGUCGC-----UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 158281 0.7 0.751797
Target:  5'- -aGAuGAAGCugGAGggcguGCCGGCccccaaGGCCGCg -3'
miRNA:   3'- caCU-CUUCGugCUC-----CGGUCG------CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 105220 0.7 0.751797
Target:  5'- -cGAGcuGAGCGCGaAGGCguaCAGCGugagcGCCGCg -3'
miRNA:   3'- caCUC--UUCGUGC-UCCG---GUCGC-----UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 92940 0.7 0.751797
Target:  5'- -aGGGggGccCugGAGGUgcaCAGCGACCGa -3'
miRNA:   3'- caCUCuuC--GugCUCCG---GUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 71559 0.7 0.742439
Target:  5'- cUGAGGAcgACGAGGaCAGCGACCa- -3'
miRNA:   3'- cACUCUUcgUGCUCCgGUCGCUGGcg -5'
9362 5' -57.3 NC_002512.2 + 50795 0.7 0.751797
Target:  5'- -cGAGAAGUccuCGGGGaUCAGCGGCaGCa -3'
miRNA:   3'- caCUCUUCGu--GCUCC-GGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 90436 0.7 0.723461
Target:  5'- -gGAGAagGGCAgGaAGGgCGGCGGCCGg -3'
miRNA:   3'- caCUCU--UCGUgC-UCCgGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 184460 0.7 0.723461
Target:  5'- -gGAGucGC-CGcGGCCGGCG-CCGCc -3'
miRNA:   3'- caCUCuuCGuGCuCCGGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 102513 0.7 0.723461
Target:  5'- -cGGGGAGgACGAggaggaGGCCagGGCGACgGCg -3'
miRNA:   3'- caCUCUUCgUGCU------CCGG--UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 105643 0.7 0.723461
Target:  5'- -cGAGAcccGGC-CGAGGUagGGCGAgCCGCa -3'
miRNA:   3'- caCUCU---UCGuGCUCCGg-UCGCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.