miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 110887 0.66 0.908122
Target:  5'- --aGGAGGCGCuuggcgGAGGCCAGCcGCagGCa -3'
miRNA:   3'- cacUCUUCGUG------CUCCGGUCGcUGg-CG- -5'
9362 5' -57.3 NC_002512.2 + 94661 0.66 0.908122
Target:  5'- -cGAGGcGGCcCGGGGCCGGgGGgccccccggcCCGCu -3'
miRNA:   3'- caCUCU-UCGuGCUCCGGUCgCU----------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 96340 0.66 0.908122
Target:  5'- aGUG-GAAGagcaCGCGGGGCgugaGGCGAUCGUc -3'
miRNA:   3'- -CACuCUUC----GUGCUCCGg---UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 195732 0.67 0.902108
Target:  5'- -aGGGGAGCGggaaccgcucCGAGGUCGuCGGCCGg -3'
miRNA:   3'- caCUCUUCGU----------GCUCCGGUcGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 97847 0.67 0.902108
Target:  5'- -gGGGAAGCG-GAGGCgA-CGACCGa -3'
miRNA:   3'- caCUCUUCGUgCUCCGgUcGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 112338 0.67 0.902108
Target:  5'- uUGAGGAGCAcguucuCGAGcGCCAGC--CCGg -3'
miRNA:   3'- cACUCUUCGU------GCUC-CGGUCGcuGGCg -5'
9362 5' -57.3 NC_002512.2 + 105940 0.67 0.901495
Target:  5'- -cGAGGgucccgccGGCACGAgucugacGGCCAGCccGCCGUc -3'
miRNA:   3'- caCUCU--------UCGUGCU-------CCGGUCGc-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 175259 0.67 0.895876
Target:  5'- -aGGGccGCgcucgGCGGGuaGCUGGCGGCCGCg -3'
miRNA:   3'- caCUCuuCG-----UGCUC--CGGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 155379 0.67 0.895876
Target:  5'- -cGGGAc-CGCGAGGCUGGCGAgguccucuCCGUc -3'
miRNA:   3'- caCUCUucGUGCUCCGGUCGCU--------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 103466 0.67 0.895876
Target:  5'- -cGAGGA-CGCGgcucGGGUCucggcGGCGGCCGCg -3'
miRNA:   3'- caCUCUUcGUGC----UCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 55899 0.67 0.895876
Target:  5'- cUGAGggGCugGA-GCCAucuccCGugCGCc -3'
miRNA:   3'- cACUCuuCGugCUcCGGUc----GCugGCG- -5'
9362 5' -57.3 NC_002512.2 + 156833 0.67 0.895876
Target:  5'- ------uGUGCGAGGCCuGCGgggGCCGCu -3'
miRNA:   3'- cacucuuCGUGCUCCGGuCGC---UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 200485 0.67 0.895876
Target:  5'- -gGAGucGUGCGAGGgCGGCGuccuCCGa -3'
miRNA:   3'- caCUCuuCGUGCUCCgGUCGCu---GGCg -5'
9362 5' -57.3 NC_002512.2 + 154713 0.67 0.895241
Target:  5'- -cGAGcGGCGCGAcGGaacggcguugcguCC-GCGGCCGCg -3'
miRNA:   3'- caCUCuUCGUGCU-CC-------------GGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113921 0.67 0.895241
Target:  5'- -cGAGgcGgACGuuccacucGGCCAGCGagagcagGCCGCg -3'
miRNA:   3'- caCUCuuCgUGCu-------CCGGUCGC-------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90766 0.67 0.893964
Target:  5'- -cGAGAAGCGCuucuuGGCCaacgaggugacgcgGGCGAcgauCCGCu -3'
miRNA:   3'- caCUCUUCGUGcu---CCGG--------------UCGCU----GGCG- -5'
9362 5' -57.3 NC_002512.2 + 113061 0.67 0.889429
Target:  5'- -gGAGccGCACGAgGGCCAGgCGGUCGa -3'
miRNA:   3'- caCUCuuCGUGCU-CCGGUC-GCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 142 0.67 0.889429
Target:  5'- -cGGGGAGCcggGCGGGgcGCCGGCGGaggagCGCg -3'
miRNA:   3'- caCUCUUCG---UGCUC--CGGUCGCUg----GCG- -5'
9362 5' -57.3 NC_002512.2 + 229545 0.67 0.889429
Target:  5'- -cGGGGAGCcggGCGGGgcGCCGGCGGaggagCGCg -3'
miRNA:   3'- caCUCUUCG---UGCUC--CGGUCGCUg----GCG- -5'
9362 5' -57.3 NC_002512.2 + 118895 0.67 0.889429
Target:  5'- gGUGaAGAA-CACGGGGCCcGCG-CUGUg -3'
miRNA:   3'- -CAC-UCUUcGUGCUCCGGuCGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.