miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 113265 0.7 0.751797
Target:  5'- -cGAGggGgGC--GGCCGGCGgggcaGCCGCg -3'
miRNA:   3'- caCUCuuCgUGcuCCGGUCGC-----UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113479 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGgCgucagGGCGACCcGCc -3'
miRNA:   3'- caCUCUUcGUGCUCCgG-----UCGCUGG-CG- -5'
9362 5' -57.3 NC_002512.2 + 113921 0.67 0.895241
Target:  5'- -cGAGgcGgACGuuccacucGGCCAGCGagagcagGCCGCg -3'
miRNA:   3'- caCUCuuCgUGCu-------CCGGUCGC-------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 115273 0.71 0.713858
Target:  5'- -cGGGGAGCGCcuGGCCggGGUGAUCGUg -3'
miRNA:   3'- caCUCUUCGUGcuCCGG--UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 116241 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGCCAcccuGCagguGCUGCg -3'
miRNA:   3'- caCUCUUcGUGCUCCGGU----CGc---UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 118895 0.67 0.889429
Target:  5'- gGUGaAGAA-CACGGGGCCcGCG-CUGUg -3'
miRNA:   3'- -CAC-UCUUcGUGCUCCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 119551 0.66 0.924835
Target:  5'- -cGGGGAGC--GGGGaCCgGGCGgACCGCg -3'
miRNA:   3'- caCUCUUCGugCUCC-GG-UCGC-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 119709 0.72 0.655155
Target:  5'- -cGAGAAGCGgcCGGccGGCCGuGCGcCCGCa -3'
miRNA:   3'- caCUCUUCGU--GCU--CCGGU-CGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 121275 0.73 0.576163
Target:  5'- -cGAGAgacGGgACG-GGCCcGCGGCCGCc -3'
miRNA:   3'- caCUCU---UCgUGCuCCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 121383 0.76 0.410677
Target:  5'- -aGAGGAGgGCGAcGGCCGGaCGgaGCCGCg -3'
miRNA:   3'- caCUCUUCgUGCU-CCGGUC-GC--UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 121811 0.69 0.814079
Target:  5'- cGUGGuGGAcagcacGCACGGGGCgGGUGACCu- -3'
miRNA:   3'- -CACU-CUU------CGUGCUCCGgUCGCUGGcg -5'
9362 5' -57.3 NC_002512.2 + 122098 0.67 0.889429
Target:  5'- ---cGGA-CGCGAGGUCGGCGcugacgucgGCCGCg -3'
miRNA:   3'- cacuCUUcGUGCUCCGGUCGC---------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 122788 0.71 0.70419
Target:  5'- -cGAGGAGgACG-GGCCGcCGACCGa -3'
miRNA:   3'- caCUCUUCgUGCuCCGGUcGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 124755 0.66 0.908122
Target:  5'- -cGuGGAGCcguCGucGGcCCAGaCGACCGCg -3'
miRNA:   3'- caCuCUUCGu--GCu-CC-GGUC-GCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 124875 0.67 0.868112
Target:  5'- -cGAGAAccGgGCGGcGGCCccgucacGGCGACCGUu -3'
miRNA:   3'- caCUCUU--CgUGCU-CCGG-------UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 124929 0.86 0.116269
Target:  5'- -cGAGAGaCACGAGGCCGGCG-CCGCg -3'
miRNA:   3'- caCUCUUcGUGCUCCGGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 125134 0.66 0.908122
Target:  5'- -cGGGAcgacGGCgACGAGGaCGGCGAC-GCg -3'
miRNA:   3'- caCUCU----UCG-UGCUCCgGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 126391 0.68 0.854096
Target:  5'- -gGAGAGcGCcCGGGGCCccgGGCG-CCGUc -3'
miRNA:   3'- caCUCUU-CGuGCUCCGG---UCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 126758 0.72 0.605682
Target:  5'- -cGAGAcGCcuCGGGGCgCGGCGGCgGCg -3'
miRNA:   3'- caCUCUuCGu-GCUCCG-GUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 126919 0.71 0.713858
Target:  5'- -gGGGAGGC-CG-GGCUGGCGAuacCCGCc -3'
miRNA:   3'- caCUCUUCGuGCuCCGGUCGCU---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.