miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 112338 0.67 0.902108
Target:  5'- uUGAGGAGCAcguucuCGAGcGCCAGC--CCGg -3'
miRNA:   3'- cACUCUUCGU------GCUC-CGGUCGcuGGCg -5'
9362 5' -57.3 NC_002512.2 + 97847 0.67 0.902108
Target:  5'- -gGGGAAGCG-GAGGCgA-CGACCGa -3'
miRNA:   3'- caCUCUUCGUgCUCCGgUcGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 105940 0.67 0.901495
Target:  5'- -cGAGGgucccgccGGCACGAgucugacGGCCAGCccGCCGUc -3'
miRNA:   3'- caCUCU--------UCGUGCU-------CCGGUCGc-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 200485 0.67 0.895876
Target:  5'- -gGAGucGUGCGAGGgCGGCGuccuCCGa -3'
miRNA:   3'- caCUCuuCGUGCUCCgGUCGCu---GGCg -5'
9362 5' -57.3 NC_002512.2 + 175259 0.67 0.895876
Target:  5'- -aGGGccGCgcucgGCGGGuaGCUGGCGGCCGCg -3'
miRNA:   3'- caCUCuuCG-----UGCUC--CGGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 103466 0.67 0.895876
Target:  5'- -cGAGGA-CGCGgcucGGGUCucggcGGCGGCCGCg -3'
miRNA:   3'- caCUCUUcGUGC----UCCGG-----UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 55899 0.67 0.895876
Target:  5'- cUGAGggGCugGA-GCCAucuccCGugCGCc -3'
miRNA:   3'- cACUCuuCGugCUcCGGUc----GCugGCG- -5'
9362 5' -57.3 NC_002512.2 + 154713 0.67 0.895241
Target:  5'- -cGAGcGGCGCGAcGGaacggcguugcguCC-GCGGCCGCg -3'
miRNA:   3'- caCUCuUCGUGCU-CC-------------GGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113921 0.67 0.895241
Target:  5'- -cGAGgcGgACGuuccacucGGCCAGCGagagcagGCCGCg -3'
miRNA:   3'- caCUCuuCgUGCu-------CCGGUCGC-------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90766 0.67 0.893964
Target:  5'- -cGAGAAGCGCuucuuGGCCaacgaggugacgcgGGCGAcgauCCGCu -3'
miRNA:   3'- caCUCUUCGUGcu---CCGG--------------UCGCU----GGCG- -5'
9362 5' -57.3 NC_002512.2 + 229545 0.67 0.889429
Target:  5'- -cGGGGAGCcggGCGGGgcGCCGGCGGaggagCGCg -3'
miRNA:   3'- caCUCUUCG---UGCUC--CGGUCGCUg----GCG- -5'
9362 5' -57.3 NC_002512.2 + 155379 0.67 0.895876
Target:  5'- -cGGGAc-CGCGAGGCUGGCGAgguccucuCCGUc -3'
miRNA:   3'- caCUCUucGUGCUCCGGUCGCU--------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 113479 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGgCgucagGGCGACCcGCc -3'
miRNA:   3'- caCUCUUcGUGCUCCgG-----UCGCUGG-CG- -5'
9362 5' -57.3 NC_002512.2 + 103756 0.68 0.846444
Target:  5'- -aGAGgcGCuACGAGGagaucucgaaCCGGCGAcaCCGCc -3'
miRNA:   3'- caCUCuuCG-UGCUCC----------GGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 210485 0.68 0.830599
Target:  5'- -cGAGGAGCagauccGCGAGGCgAgggcccgacGCGAgCGCg -3'
miRNA:   3'- caCUCUUCG------UGCUCCGgU---------CGCUgGCG- -5'
9362 5' -57.3 NC_002512.2 + 220100 0.68 0.830599
Target:  5'- -cGAGGAGguCGAGGCguccGUGAgCCGCc -3'
miRNA:   3'- caCUCUUCguGCUCCGgu--CGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 211448 0.68 0.830599
Target:  5'- ---cGGAGCuCGGGcGCCuGCGGCUGCc -3'
miRNA:   3'- cacuCUUCGuGCUC-CGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 196411 0.68 0.82242
Target:  5'- -cGGGGAcGCGgGGGG-CGGCGGCCGg -3'
miRNA:   3'- caCUCUU-CGUgCUCCgGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 79233 0.68 0.82242
Target:  5'- -aGAGAA-CGaGAGGCCGuCGGCCGCc -3'
miRNA:   3'- caCUCUUcGUgCUCCGGUcGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 149818 0.68 0.82242
Target:  5'- -cGAGGAcaGCGAGGCggagAGCGACcCGCg -3'
miRNA:   3'- caCUCUUcgUGCUCCGg---UCGCUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.