miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 113061 0.67 0.889429
Target:  5'- -gGAGccGCACGAgGGCCAGgCGGUCGa -3'
miRNA:   3'- caCUCuuCGUGCU-CCGGUC-GCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 142 0.67 0.889429
Target:  5'- -cGGGGAGCcggGCGGGgcGCCGGCGGaggagCGCg -3'
miRNA:   3'- caCUCUUCG---UGCUC--CGGUCGCUg----GCG- -5'
9362 5' -57.3 NC_002512.2 + 118895 0.67 0.889429
Target:  5'- gGUGaAGAA-CACGGGGCCcGCG-CUGUg -3'
miRNA:   3'- -CAC-UCUUcGUGCUCCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 184408 0.67 0.887453
Target:  5'- -cGGGggGCGCucGGCCuucuccgucgccucGGCcGCCGCc -3'
miRNA:   3'- caCUCuuCGUGcuCCGG--------------UCGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 228805 0.67 0.882769
Target:  5'- -aGGGAGGgACGGGGagaCCGGCcGCCGg -3'
miRNA:   3'- caCUCUUCgUGCUCC---GGUCGcUGGCg -5'
9362 5' -57.3 NC_002512.2 + 130048 0.67 0.882769
Target:  5'- uUGAGcAGGCGgaaGAGGUacaggaCGGUGGCCGCc -3'
miRNA:   3'- cACUC-UUCGUg--CUCCG------GUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 100746 0.67 0.882092
Target:  5'- cGUGGGGcccguuguacuGCGCGAGGCUguAGUcgcagagGACCGCc -3'
miRNA:   3'- -CACUCUu----------CGUGCUCCGG--UCG-------CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 223672 0.67 0.871683
Target:  5'- cUGGGGcuccuccaagGGCGcCGAcaacggcaucguccuGGCCGGCGACuCGCa -3'
miRNA:   3'- cACUCU----------UCGU-GCU---------------CCGGUCGCUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 227356 0.67 0.868831
Target:  5'- -cGGGAcGgAgGAGGCCcGgGGCCGCc -3'
miRNA:   3'- caCUCUuCgUgCUCCGGuCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 220305 0.67 0.868831
Target:  5'- -cGAGccGcCGgGGGGCCGGgGGCCGg -3'
miRNA:   3'- caCUCuuC-GUgCUCCGGUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 198269 0.67 0.868831
Target:  5'- aGUGccGGAGCugcuCGAGGCUgaucuucagggAGCGgGCCGCg -3'
miRNA:   3'- -CACu-CUUCGu---GCUCCGG-----------UCGC-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 124875 0.67 0.868112
Target:  5'- -cGAGAAccGgGCGGcGGCCccgucacGGCGACCGUu -3'
miRNA:   3'- caCUCUU--CgUGCU-CCGG-------UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 211351 0.68 0.86156
Target:  5'- -gGGGAcGCGCGcGGCC--UGACCGCc -3'
miRNA:   3'- caCUCUuCGUGCuCCGGucGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 204642 0.68 0.860822
Target:  5'- -cGGGGAccgggacggcgacGCGCGGGggaucGCCGGCGGCuCGCu -3'
miRNA:   3'- caCUCUU-------------CGUGCUC-----CGGUCGCUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 127090 0.68 0.854096
Target:  5'- ---cGGAGCG-GAGGgCGGCGGCgGCg -3'
miRNA:   3'- cacuCUUCGUgCUCCgGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 126391 0.68 0.854096
Target:  5'- -gGAGAGcGCcCGGGGCCccgGGCG-CCGUc -3'
miRNA:   3'- caCUCUU-CGuGCUCCGG---UCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 223526 0.68 0.854096
Target:  5'- -gGAGAacGGCACGc-GCCcGCGGcCCGCg -3'
miRNA:   3'- caCUCU--UCGUGCucCGGuCGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 144608 0.68 0.854096
Target:  5'- ------cGCACGAGGUCcGCG-CCGCg -3'
miRNA:   3'- cacucuuCGUGCUCCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 154251 0.68 0.854096
Target:  5'- ------cGCGCGAGcGCCcGCGugCGCg -3'
miRNA:   3'- cacucuuCGUGCUC-CGGuCGCugGCG- -5'
9362 5' -57.3 NC_002512.2 + 221408 0.68 0.85182
Target:  5'- -gGGGAGGCgGCGGGucuguccgacggccGCCAuGCGgACCGCg -3'
miRNA:   3'- caCUCUUCG-UGCUC--------------CGGU-CGC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.