miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 127090 0.68 0.854096
Target:  5'- ---cGGAGCG-GAGGgCGGCGGCgGCg -3'
miRNA:   3'- cacuCUUCGUgCUCCgGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 127230 0.74 0.527782
Target:  5'- gGUGAGAcgcgGGCACGAccgaggcgacGGCCggaacGGCGACgGCg -3'
miRNA:   3'- -CACUCU----UCGUGCU----------CCGG-----UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 127723 0.66 0.92431
Target:  5'- -gGGGAAGCgaucgacgacccaGCGcGGUC-GCGGCCGUa -3'
miRNA:   3'- caCUCUUCG-------------UGCuCCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 127912 0.66 0.929959
Target:  5'- -gGAucGGcCACGAGcccGCCGGCGGgcCCGCg -3'
miRNA:   3'- caCUcuUC-GUGCUC---CGGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 128205 0.66 0.929959
Target:  5'- cGUGAGGAaaccGC-CGAcguagaucGGcCCGGCGuCCGCg -3'
miRNA:   3'- -CACUCUU----CGuGCU--------CC-GGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 128801 0.71 0.70419
Target:  5'- -cGGGGucuucAGCGaGAGGUCGGCGGCgGCg -3'
miRNA:   3'- caCUCU-----UCGUgCUCCGGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 129863 0.71 0.665028
Target:  5'- -gGAGGAGCcccuUGAGGCCGcacgcgacGCGGCCGa -3'
miRNA:   3'- caCUCUUCGu---GCUCCGGU--------CGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 130048 0.67 0.882769
Target:  5'- uUGAGcAGGCGgaaGAGGUacaggaCGGUGGCCGCc -3'
miRNA:   3'- cACUC-UUCGUg--CUCCG------GUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 130890 0.69 0.779245
Target:  5'- -gGGGccGCGCaGAGGCCGGCcAUCGUg -3'
miRNA:   3'- caCUCuuCGUG-CUCCGGUCGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 132018 0.66 0.92431
Target:  5'- -gGGGAccucGGCgGCGAcgucgucGGCCAGgGACCGg -3'
miRNA:   3'- caCUCU----UCG-UGCU-------CCGGUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 133822 0.66 0.913346
Target:  5'- -cGAGAcGGC-CGAGucguaccGCCGGCGcuuCCGCg -3'
miRNA:   3'- caCUCU-UCGuGCUC-------CGGUCGCu--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 135195 0.66 0.919487
Target:  5'- -cGAGcugucGCACGAGGgCAGCuGCgCGCc -3'
miRNA:   3'- caCUCuu---CGUGCUCCgGUCGcUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 141956 0.66 0.929959
Target:  5'- aUGAGAGugACGAGGUaCAGCGuguagucgguCCGCa -3'
miRNA:   3'- cACUCUUcgUGCUCCG-GUCGCu---------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 144608 0.68 0.854096
Target:  5'- ------cGCACGAGGUCcGCG-CCGCg -3'
miRNA:   3'- cacucuuCGUGCUCCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 145088 0.66 0.919487
Target:  5'- -cGAGuucCGCGAGGCgucGCGGCUGCc -3'
miRNA:   3'- caCUCuucGUGCUCCGgu-CGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146713 0.71 0.674875
Target:  5'- -gGAGAcGacgGCGGGG-CGGCGGCCGCg -3'
miRNA:   3'- caCUCUuCg--UGCUCCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146862 0.68 0.846444
Target:  5'- -cGAGcucGCGCGGGGCCA-CuACCGCc -3'
miRNA:   3'- caCUCuu-CGUGCUCCGGUcGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146952 0.75 0.462842
Target:  5'- -cGuGAAGCGCGAcGaCGGCGGCCGCg -3'
miRNA:   3'- caCuCUUCGUGCUcCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 147628 0.67 0.889429
Target:  5'- --cGGggGCgACGAcgacGG-CGGCGGCCGCu -3'
miRNA:   3'- cacUCuuCG-UGCU----CCgGUCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 148504 0.71 0.68469
Target:  5'- -gGGGAcgGGgACGAGGa-GGCGGCCGCc -3'
miRNA:   3'- caCUCU--UCgUGCUCCggUCGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.