miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 116241 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGCCAcccuGCagguGCUGCg -3'
miRNA:   3'- caCUCUUcGUGCUCCGGU----CGc---UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146862 0.68 0.846444
Target:  5'- -cGAGcucGCGCGGGGCCA-CuACCGCc -3'
miRNA:   3'- caCUCuu-CGUGCUCCGGUcGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113479 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGgCgucagGGCGACCcGCc -3'
miRNA:   3'- caCUCUUcGUGCUCCgG-----UCGCUGG-CG- -5'
9362 5' -57.3 NC_002512.2 + 103756 0.68 0.846444
Target:  5'- -aGAGgcGCuACGAGGagaucucgaaCCGGCGAcaCCGCc -3'
miRNA:   3'- caCUCuuCG-UGCUCC----------GGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 210485 0.68 0.830599
Target:  5'- -cGAGGAGCagauccGCGAGGCgAgggcccgacGCGAgCGCg -3'
miRNA:   3'- caCUCUUCG------UGCUCCGgU---------CGCUgGCG- -5'
9362 5' -57.3 NC_002512.2 + 220100 0.68 0.830599
Target:  5'- -cGAGGAGguCGAGGCguccGUGAgCCGCc -3'
miRNA:   3'- caCUCUUCguGCUCCGgu--CGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 211448 0.68 0.830599
Target:  5'- ---cGGAGCuCGGGcGCCuGCGGCUGCc -3'
miRNA:   3'- cacuCUUCGuGCUC-CGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 184959 0.68 0.830599
Target:  5'- -cGAGAgcauggAGCGCGuccGCCGcGCGGCCGUc -3'
miRNA:   3'- caCUCU------UCGUGCuc-CGGU-CGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90550 0.68 0.830599
Target:  5'- -gGAGGAGCgggaggACGAGGgCgagGGCGACgGCc -3'
miRNA:   3'- caCUCUUCG------UGCUCCgG---UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 196411 0.68 0.82242
Target:  5'- -cGGGGAcGCGgGGGG-CGGCGGCCGg -3'
miRNA:   3'- caCUCUU-CGUgCUCCgGUCGCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 149818 0.68 0.82242
Target:  5'- -cGAGGAcaGCGAGGCggagAGCGACcCGCg -3'
miRNA:   3'- caCUCUUcgUGCUCCGg---UCGCUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 79233 0.68 0.82242
Target:  5'- -aGAGAA-CGaGAGGCCGuCGGCCGCc -3'
miRNA:   3'- caCUCUUcGUgCUCCGGUcGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 121811 0.69 0.814079
Target:  5'- cGUGGuGGAcagcacGCACGGGGCgGGUGACCu- -3'
miRNA:   3'- -CACU-CUU------CGUGCUCCGgUCGCUGGcg -5'
9362 5' -57.3 NC_002512.2 + 113137 0.69 0.814079
Target:  5'- -gGAGAccgcGCGCGGGgcGCCGGCcucGCCGCg -3'
miRNA:   3'- caCUCUu---CGUGCUC--CGGUCGc--UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 193947 0.69 0.805584
Target:  5'- -gGGGAacgucgucuGGCGCGAGaggccGCCGGCGAgcuccugaCCGCg -3'
miRNA:   3'- caCUCU---------UCGUGCUC-----CGGUCGCU--------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 164442 0.69 0.800415
Target:  5'- -cGGGAAGCcgcucggcgcccucgGCGGGGgCGaCGACCGCc -3'
miRNA:   3'- caCUCUUCG---------------UGCUCCgGUcGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 168143 0.69 0.796941
Target:  5'- -cGAGggGCugGGGGUgGGgGGCgGa -3'
miRNA:   3'- caCUCuuCGugCUCCGgUCgCUGgCg -5'
9362 5' -57.3 NC_002512.2 + 225585 0.69 0.796069
Target:  5'- -cGAGggGCGCcGGGucuucgaCCAGCuGGCCGUc -3'
miRNA:   3'- caCUCuuCGUGcUCC-------GGUCG-CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 203296 0.69 0.79432
Target:  5'- cGUGGcGAAGCcggccgugcacgucGCGuaguAGGCCAG-GGCCGCg -3'
miRNA:   3'- -CACU-CUUCG--------------UGC----UCCGGUCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 188636 0.69 0.788159
Target:  5'- -cGGGccGCAaGGGcGCCGGCGGCgGCg -3'
miRNA:   3'- caCUCuuCGUgCUC-CGGUCGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.