miRNA display CGI


Results 81 - 100 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 220100 0.68 0.830599
Target:  5'- -cGAGGAGguCGAGGCguccGUGAgCCGCc -3'
miRNA:   3'- caCUCUUCguGCUCCGgu--CGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 211448 0.68 0.830599
Target:  5'- ---cGGAGCuCGGGcGCCuGCGGCUGCc -3'
miRNA:   3'- cacuCUUCGuGCUC-CGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 184959 0.68 0.830599
Target:  5'- -cGAGAgcauggAGCGCGuccGCCGcGCGGCCGUc -3'
miRNA:   3'- caCUCU------UCGUGCuc-CGGU-CGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 90550 0.68 0.830599
Target:  5'- -gGAGGAGCgggaggACGAGGgCgagGGCGACgGCc -3'
miRNA:   3'- caCUCUUCG------UGCUCCgG---UCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 116241 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGCCAcccuGCagguGCUGCg -3'
miRNA:   3'- caCUCUUcGUGCUCCGGU----CGc---UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 146862 0.68 0.846444
Target:  5'- -cGAGcucGCGCGGGGCCA-CuACCGCc -3'
miRNA:   3'- caCUCuu-CGUGCUCCGGUcGcUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 113479 0.68 0.846444
Target:  5'- -gGAGAAcCACGAGGgCgucagGGCGACCcGCc -3'
miRNA:   3'- caCUCUUcGUGCUCCgG-----UCGCUGG-CG- -5'
9362 5' -57.3 NC_002512.2 + 103756 0.68 0.846444
Target:  5'- -aGAGgcGCuACGAGGagaucucgaaCCGGCGAcaCCGCc -3'
miRNA:   3'- caCUCuuCG-UGCUCC----------GGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 221408 0.68 0.85182
Target:  5'- -gGGGAGGCgGCGGGucuguccgacggccGCCAuGCGgACCGCg -3'
miRNA:   3'- caCUCUUCG-UGCUC--------------CGGU-CGC-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 154251 0.68 0.854096
Target:  5'- ------cGCGCGAGcGCCcGCGugCGCg -3'
miRNA:   3'- cacucuuCGUGCUC-CGGuCGCugGCG- -5'
9362 5' -57.3 NC_002512.2 + 223526 0.68 0.854096
Target:  5'- -gGAGAacGGCACGc-GCCcGCGGcCCGCg -3'
miRNA:   3'- caCUCU--UCGUGCucCGGuCGCU-GGCG- -5'
9362 5' -57.3 NC_002512.2 + 144608 0.68 0.854096
Target:  5'- ------cGCACGAGGUCcGCG-CCGCg -3'
miRNA:   3'- cacucuuCGUGCUCCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 127090 0.68 0.854096
Target:  5'- ---cGGAGCG-GAGGgCGGCGGCgGCg -3'
miRNA:   3'- cacuCUUCGUgCUCCgGUCGCUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 126391 0.68 0.854096
Target:  5'- -gGAGAGcGCcCGGGGCCccgGGCG-CCGUc -3'
miRNA:   3'- caCUCUU-CGuGCUCCGG---UCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 204642 0.68 0.860822
Target:  5'- -cGGGGAccgggacggcgacGCGCGGGggaucGCCGGCGGCuCGCu -3'
miRNA:   3'- caCUCUU-------------CGUGCUC-----CGGUCGCUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 211351 0.68 0.86156
Target:  5'- -gGGGAcGCGCGcGGCC--UGACCGCc -3'
miRNA:   3'- caCUCUuCGUGCuCCGGucGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 124875 0.67 0.868112
Target:  5'- -cGAGAAccGgGCGGcGGCCccgucacGGCGACCGUu -3'
miRNA:   3'- caCUCUU--CgUGCU-CCGG-------UCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 227356 0.67 0.868831
Target:  5'- -cGGGAcGgAgGAGGCCcGgGGCCGCc -3'
miRNA:   3'- caCUCUuCgUgCUCCGGuCgCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 220305 0.67 0.868831
Target:  5'- -cGAGccGcCGgGGGGCCGGgGGCCGg -3'
miRNA:   3'- caCUCuuC-GUgCUCCGGUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 198269 0.67 0.868831
Target:  5'- aGUGccGGAGCugcuCGAGGCUgaucuucagggAGCGgGCCGCg -3'
miRNA:   3'- -CACu-CUUCGu---GCUCCGG-----------UCGC-UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.