miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9363 3' -57.8 NC_002512.2 + 208226 0.66 0.939448
Target:  5'- uGaGUCUCCGa-CAUGGAcgaggagaaGGCCCGGUc -3'
miRNA:   3'- gC-CAGAGGCaaGUGCCU---------CUGGGCCAc -5'
9363 3' -57.8 NC_002512.2 + 160618 0.66 0.930069
Target:  5'- aGGUCgCUGaUCGaGGAGAUCCGGg- -3'
miRNA:   3'- gCCAGaGGCaAGUgCCUCUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 125372 0.66 0.925058
Target:  5'- uGGUCUCC-UUCGCGGuca-CCGGa- -3'
miRNA:   3'- gCCAGAGGcAAGUGCCucugGGCCac -5'
9363 3' -57.8 NC_002512.2 + 96596 0.66 0.925058
Target:  5'- gGGUcCUCUGgggaccggagCGCGGAGACgCGGg- -3'
miRNA:   3'- gCCA-GAGGCaa--------GUGCCUCUGgGCCac -5'
9363 3' -57.8 NC_002512.2 + 3633 0.66 0.923512
Target:  5'- aCGGaUUCUGUUCGCGGccgcgguggcgauaAGAucgcuccggcucCCCGGUGa -3'
miRNA:   3'- -GCCaGAGGCAAGUGCC--------------UCU------------GGGCCAC- -5'
9363 3' -57.8 NC_002512.2 + 221564 0.66 0.913278
Target:  5'- gCGGUCUCCGgcUCcCGGcccugcuccgucGACCCGGa- -3'
miRNA:   3'- -GCCAGAGGCa-AGuGCCu-----------CUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 223066 0.67 0.908739
Target:  5'- uGGUCgccaCCGUg-GCcGAGACCCGGg- -3'
miRNA:   3'- gCCAGa---GGCAagUGcCUCUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 194528 0.67 0.902874
Target:  5'- gGGUCa----UCAUGGAGGCCCGGg- -3'
miRNA:   3'- gCCAGaggcaAGUGCCUCUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 225983 0.67 0.877349
Target:  5'- cCGGUCUCgGgggCAaGGGGACCgGGa- -3'
miRNA:   3'- -GCCAGAGgCaa-GUgCCUCUGGgCCac -5'
9363 3' -57.8 NC_002512.2 + 144125 0.67 0.877349
Target:  5'- gCGGUCUaucucggccaggUCGgcCGCGGAGACCCcgaGGUu -3'
miRNA:   3'- -GCCAGA------------GGCaaGUGCCUCUGGG---CCAc -5'
9363 3' -57.8 NC_002512.2 + 162231 0.68 0.863394
Target:  5'- aCGGUCgagcCCGcgUC-CGGGGGCCCG-UGg -3'
miRNA:   3'- -GCCAGa---GGCa-AGuGCCUCUGGGCcAC- -5'
9363 3' -57.8 NC_002512.2 + 207643 0.68 0.856133
Target:  5'- gGuGUUUCCGUUC-CGGcGGCCgUGGUGg -3'
miRNA:   3'- gC-CAGAGGCAAGuGCCuCUGG-GCCAC- -5'
9363 3' -57.8 NC_002512.2 + 205897 0.68 0.841071
Target:  5'- gGGUCcCCGcUCGCGG-GACCCGu-- -3'
miRNA:   3'- gCCAGaGGCaAGUGCCuCUGGGCcac -5'
9363 3' -57.8 NC_002512.2 + 177054 0.69 0.833282
Target:  5'- aGGUgcUUGUUCGUGGAGAgCCGGUGa -3'
miRNA:   3'- gCCAgaGGCAAGUGCCUCUgGGCCAC- -5'
9363 3' -57.8 NC_002512.2 + 199625 0.69 0.825328
Target:  5'- cCGG-CUCCGcgcgucCGCGGGGACCCGu-- -3'
miRNA:   3'- -GCCaGAGGCaa----GUGCCUCUGGGCcac -5'
9363 3' -57.8 NC_002512.2 + 198759 0.69 0.817217
Target:  5'- aCGGcCUUCG-UCuCGGGGACCUGGg- -3'
miRNA:   3'- -GCCaGAGGCaAGuGCCUCUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 207904 0.69 0.800548
Target:  5'- gCGGUggCUCCucgaCGCGGAGcucgaacggGCCCGGUGg -3'
miRNA:   3'- -GCCA--GAGGcaa-GUGCCUC---------UGGGCCAC- -5'
9363 3' -57.8 NC_002512.2 + 155059 0.7 0.786816
Target:  5'- gGGUCUCCGUUCGCGcgcGGGGucgugacguucggggUCCGGg- -3'
miRNA:   3'- gCCAGAGGCAAGUGC---CUCU---------------GGGCCac -5'
9363 3' -57.8 NC_002512.2 + 183780 0.7 0.765629
Target:  5'- gGGgcgaccCUCCGccuuugUCGCGGuGACCCGGg- -3'
miRNA:   3'- gCCa-----GAGGCa-----AGUGCCuCUGGGCCac -5'
9363 3' -57.8 NC_002512.2 + 77097 0.7 0.756614
Target:  5'- gCGGacCUCCGag-ACGGAGGCCCGGc- -3'
miRNA:   3'- -GCCa-GAGGCaagUGCCUCUGGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.