miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9363 5' -49.1 NC_002512.2 + 103191 0.75 0.934014
Target:  5'- aCCCCCgGGGUGUCgacgUAGcgCaGGAUCCg -3'
miRNA:   3'- -GGGGGgUUUACAG----AUCuaGcCUUAGG- -5'
9363 5' -49.1 NC_002512.2 + 154398 0.72 0.975249
Target:  5'- gCCCCC----GUCggaggcGAUCGGggUCCg -3'
miRNA:   3'- gGGGGGuuuaCAGau----CUAGCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 213539 0.72 0.979999
Target:  5'- gCCCUCGGAgcGUCUGcuGcgCGGggUCCg -3'
miRNA:   3'- gGGGGGUUUa-CAGAU--CuaGCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 221895 0.72 0.984034
Target:  5'- gCUCCCAGAUcGg--GGAUCGGGcgCCa -3'
miRNA:   3'- gGGGGGUUUA-CagaUCUAGCCUuaGG- -5'
9363 5' -49.1 NC_002512.2 + 177778 0.69 0.996411
Target:  5'- gUCCUCCAGG-GUCUGGAUCGaGuacuUCUg -3'
miRNA:   3'- -GGGGGGUUUaCAGAUCUAGC-Cuu--AGG- -5'
9363 5' -49.1 NC_002512.2 + 220156 0.69 0.997361
Target:  5'- gCCCCCAAgggcgucGUGcUCUGcGUCGGGAggagguUCCg -3'
miRNA:   3'- gGGGGGUU-------UAC-AGAUcUAGCCUU------AGG- -5'
9363 5' -49.1 NC_002512.2 + 189026 0.69 0.997808
Target:  5'- cCUCCCCuccGUGUCUGucguUCGGuaauGUCCu -3'
miRNA:   3'- -GGGGGGuu-UACAGAUcu--AGCCu---UAGG- -5'
9363 5' -49.1 NC_002512.2 + 158304 0.68 0.998719
Target:  5'- gCCCCCAAGgccgcgGUCguccggCGcGAGUCCg -3'
miRNA:   3'- gGGGGGUUUa-----CAGaucua-GC-CUUAGG- -5'
9363 5' -49.1 NC_002512.2 + 220064 0.68 0.998939
Target:  5'- uCCgCCCGAGacUCUGGcgCGG-AUCCu -3'
miRNA:   3'- -GGgGGGUUUacAGAUCuaGCCuUAGG- -5'
9363 5' -49.1 NC_002512.2 + 220000 0.68 0.999193
Target:  5'- cUCCCCCucgcccggcggGUCgAGAggccgcuccgucUCGGggUCCg -3'
miRNA:   3'- -GGGGGGuuua-------CAGaUCU------------AGCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 5211 0.67 0.999418
Target:  5'- aCCUCCGAGUGgCUAGAUgauaGGuGUCUc -3'
miRNA:   3'- gGGGGGUUUACaGAUCUAg---CCuUAGG- -5'
9363 5' -49.1 NC_002512.2 + 214789 0.67 0.999418
Target:  5'- gCCCUCCGGGUcccCUGGucgCGGAgGUCCg -3'
miRNA:   3'- -GGGGGGUUUAca-GAUCua-GCCU-UAGG- -5'
9363 5' -49.1 NC_002512.2 + 60232 0.67 0.999418
Target:  5'- aCCCCCCAA---UC-GGAgCGGAuUCCc -3'
miRNA:   3'- -GGGGGGUUuacAGaUCUaGCCUuAGG- -5'
9363 5' -49.1 NC_002512.2 + 172844 0.67 0.999621
Target:  5'- gCCCCCCGGucGUC-GGAcgCGGccUCCg -3'
miRNA:   3'- -GGGGGGUUuaCAGaUCUa-GCCuuAGG- -5'
9363 5' -49.1 NC_002512.2 + 2089 0.67 0.999621
Target:  5'- -aCCCCAGuUGUCUcacuuuGUCGGGccGUCCu -3'
miRNA:   3'- ggGGGGUUuACAGAuc----UAGCCU--UAGG- -5'
9363 5' -49.1 NC_002512.2 + 169954 0.67 0.999697
Target:  5'- gCCCgCCCAcAUGUagaacaGGGUCGGGgcgaacGUCCc -3'
miRNA:   3'- -GGG-GGGUuUACAga----UCUAGCCU------UAGG- -5'
9363 5' -49.1 NC_002512.2 + 77771 0.67 0.999759
Target:  5'- aUCCCCCAGAc-UCcGGGUCGGGcggacgguUCCu -3'
miRNA:   3'- -GGGGGGUUUacAGaUCUAGCCUu-------AGG- -5'
9363 5' -49.1 NC_002512.2 + 60758 0.67 0.999759
Target:  5'- aCCCCCCAAccaGUGUCUcuGAUCauauguuaGGcccuUCCc -3'
miRNA:   3'- -GGGGGGUU---UACAGAu-CUAG--------CCuu--AGG- -5'
9363 5' -49.1 NC_002512.2 + 89881 0.66 0.99981
Target:  5'- gCUCUCCAGcgccucgGUCUGGGUCGGcgaccCCa -3'
miRNA:   3'- -GGGGGGUUua-----CAGAUCUAGCCuua--GG- -5'
9363 5' -49.1 NC_002512.2 + 218240 0.66 0.999851
Target:  5'- -gCgCCGAuauAUGUCcGGGUCGGcGUCCu -3'
miRNA:   3'- ggGgGGUU---UACAGaUCUAGCCuUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.