miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9364 5' -57 NC_002512.2 + 141791 0.66 0.941779
Target:  5'- -aGCCCCGCggUGUCGGCGa--UCCGa -3'
miRNA:   3'- acUGGGGCGa-GCAGUCGCcaaAGGUc -5'
9364 5' -57 NC_002512.2 + 199626 0.66 0.932443
Target:  5'- cGGCUCCGCgCGUCcGCGGggacCCGu -3'
miRNA:   3'- aCUGGGGCGaGCAGuCGCCaaa-GGUc -5'
9364 5' -57 NC_002512.2 + 190960 0.66 0.927442
Target:  5'- gGGCgCCCGC-CG-CGGCGGccccUCCGGc -3'
miRNA:   3'- aCUG-GGGCGaGCaGUCGCCaa--AGGUC- -5'
9364 5' -57 NC_002512.2 + 211865 0.66 0.922217
Target:  5'- gGACCUCaGCaUCGUCGGCgcccuggagcgGGUcaccUUCCGGg -3'
miRNA:   3'- aCUGGGG-CG-AGCAGUCG-----------CCA----AAGGUC- -5'
9364 5' -57 NC_002512.2 + 166015 0.67 0.916771
Target:  5'- cGGCUCCGgggacgCGuUCGGCGGccgUUCCGGg -3'
miRNA:   3'- aCUGGGGCga----GC-AGUCGCCa--AAGGUC- -5'
9364 5' -57 NC_002512.2 + 202545 0.67 0.916771
Target:  5'- cGACCCaggGCUCGcagUCGGCGGaucUCCu- -3'
miRNA:   3'- aCUGGGg--CGAGC---AGUCGCCaa-AGGuc -5'
9364 5' -57 NC_002512.2 + 205357 0.67 0.915655
Target:  5'- cGuCCCCGCUCGcugaccgggaaGGCGGUcaggcCCAGg -3'
miRNA:   3'- aCuGGGGCGAGCag---------UCGCCAaa---GGUC- -5'
9364 5' -57 NC_002512.2 + 165251 0.67 0.905213
Target:  5'- cGACCUCGCggacgCGUC-GCGGagccCCGGa -3'
miRNA:   3'- aCUGGGGCGa----GCAGuCGCCaaa-GGUC- -5'
9364 5' -57 NC_002512.2 + 159388 0.67 0.905213
Target:  5'- gGGUCCCGCggCGUCggGGCGGaaggUCCGGu -3'
miRNA:   3'- aCUGGGGCGa-GCAG--UCGCCaa--AGGUC- -5'
9364 5' -57 NC_002512.2 + 95234 0.67 0.899105
Target:  5'- cGGCCCCGCacUCGgccaCGGCGuuGUggggCCAGg -3'
miRNA:   3'- aCUGGGGCG--AGCa---GUCGC--CAaa--GGUC- -5'
9364 5' -57 NC_002512.2 + 172796 0.67 0.886246
Target:  5'- --gUCCCGCUCgGUCAGCGGagcUUgCGGu -3'
miRNA:   3'- acuGGGGCGAG-CAGUCGCCa--AAgGUC- -5'
9364 5' -57 NC_002512.2 + 152911 0.68 0.872549
Target:  5'- cGGuCCCCGgUCgGUCAGCGGgagcggUCCc- -3'
miRNA:   3'- aCU-GGGGCgAG-CAGUCGCCaa----AGGuc -5'
9364 5' -57 NC_002512.2 + 134619 0.68 0.865397
Target:  5'- cGACCCCGC-CGuUCAggagccgcGCGGcccUCCGGa -3'
miRNA:   3'- aCUGGGGCGaGC-AGU--------CGCCaa-AGGUC- -5'
9364 5' -57 NC_002512.2 + 194965 0.68 0.85805
Target:  5'- cGACCCCGC-CGUCGGUcucgUCCu- -3'
miRNA:   3'- aCUGGGGCGaGCAGUCGccaaAGGuc -5'
9364 5' -57 NC_002512.2 + 222474 0.68 0.850512
Target:  5'- cGGCCCuCGCggUCGUCaacguGGCGGUggCCGc -3'
miRNA:   3'- aCUGGG-GCG--AGCAG-----UCGCCAaaGGUc -5'
9364 5' -57 NC_002512.2 + 221354 0.69 0.834889
Target:  5'- cGGCCucgCCGCUCcguGUCGGUGGUgugUCCu- -3'
miRNA:   3'- aCUGG---GGCGAG---CAGUCGCCAa--AGGuc -5'
9364 5' -57 NC_002512.2 + 93715 0.69 0.826816
Target:  5'- cGACCCCGCcgCG-CGGCGGaucgaCGGg -3'
miRNA:   3'- aCUGGGGCGa-GCaGUCGCCaaag-GUC- -5'
9364 5' -57 NC_002512.2 + 128397 0.69 0.826816
Target:  5'- gGACCCCGuCUCGagcccggUGGCGGggucgCCGGa -3'
miRNA:   3'- aCUGGGGC-GAGCa------GUCGCCaaa--GGUC- -5'
9364 5' -57 NC_002512.2 + 138971 0.69 0.818578
Target:  5'- cGGCCCCGUUCG-CGGCcgccagUCCGGc -3'
miRNA:   3'- aCUGGGGCGAGCaGUCGccaa--AGGUC- -5'
9364 5' -57 NC_002512.2 + 99612 0.7 0.775172
Target:  5'- gGGCCCCGCgcUCGUC-GCGGUcgUCGc -3'
miRNA:   3'- aCUGGGGCG--AGCAGuCGCCAaaGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.