miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9365 5' -54.6 NC_002512.2 + 202109 0.66 0.980733
Target:  5'- cGACCgCGUccUCGUCAGCuGGUggcgcCGGu -3'
miRNA:   3'- aCUGGgGCG--AGCAGUCG-CCAaaa--GUC- -5'
9365 5' -54.6 NC_002512.2 + 218209 0.66 0.980733
Target:  5'- gGGcCCCCGcCUCGggccgCGGCGGgccgCGGc -3'
miRNA:   3'- aCU-GGGGC-GAGCa----GUCGCCaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 128397 0.66 0.980733
Target:  5'- gGACCCCGuCUCGagcccggUGGCGGgg-UCGc -3'
miRNA:   3'- aCUGGGGC-GAGCa------GUCGCCaaaAGUc -5'
9365 5' -54.6 NC_002512.2 + 150139 0.66 0.978569
Target:  5'- -cACCCCGCUCGugUCGGCGuccgcCAGc -3'
miRNA:   3'- acUGGGGCGAGC--AGUCGCcaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 77135 0.66 0.978569
Target:  5'- aGACCUCGC-CGUCGGgGGa------ -3'
miRNA:   3'- aCUGGGGCGaGCAGUCgCCaaaaguc -5'
9365 5' -54.6 NC_002512.2 + 213072 0.66 0.977886
Target:  5'- -aGCCCCGCgggcuacgugcucuUCGUCGGCGGc------ -3'
miRNA:   3'- acUGGGGCG--------------AGCAGUCGCCaaaaguc -5'
9365 5' -54.6 NC_002512.2 + 199626 0.66 0.976231
Target:  5'- cGGCUCCGCgCGUCcGCGGggacccgUUUCc- -3'
miRNA:   3'- aCUGGGGCGaGCAGuCGCCa------AAAGuc -5'
9365 5' -54.6 NC_002512.2 + 153034 0.66 0.976231
Target:  5'- cGGuCCCCGgUCGggUCGGCGGgag-CGGu -3'
miRNA:   3'- aCU-GGGGCgAGC--AGUCGCCaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 152984 0.66 0.976231
Target:  5'- cGGuCCCCGgUCGggUCGGCGGgag-CGGu -3'
miRNA:   3'- aCU-GGGGCgAGC--AGUCGCCaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 38583 0.66 0.976231
Target:  5'- uUGACCCCGC-CG-CGGuUGGUa-UCGGa -3'
miRNA:   3'- -ACUGGGGCGaGCaGUC-GCCAaaAGUC- -5'
9365 5' -54.6 NC_002512.2 + 169092 0.67 0.964994
Target:  5'- cGGCCCgCGUccUCGUCcucGCGGggcgUUCGGu -3'
miRNA:   3'- aCUGGG-GCG--AGCAGu--CGCCaa--AAGUC- -5'
9365 5' -54.6 NC_002512.2 + 152705 0.67 0.954427
Target:  5'- cGuCCCCGgUCGgggugCGGCGGg---CAGg -3'
miRNA:   3'- aCuGGGGCgAGCa----GUCGCCaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 124515 0.67 0.954427
Target:  5'- gGACCCUGUaCGUCAagGCGGgc--CAGa -3'
miRNA:   3'- aCUGGGGCGaGCAGU--CGCCaaaaGUC- -5'
9365 5' -54.6 NC_002512.2 + 109819 0.67 0.954427
Target:  5'- cGACCCCGCguucaCGUCGaaccGCcGGgcgUCGGg -3'
miRNA:   3'- aCUGGGGCGa----GCAGU----CG-CCaaaAGUC- -5'
9365 5' -54.6 NC_002512.2 + 225050 0.67 0.950471
Target:  5'- aUGGCCgCGCUCcUCGGCGGcgcgCAa -3'
miRNA:   3'- -ACUGGgGCGAGcAGUCGCCaaaaGUc -5'
9365 5' -54.6 NC_002512.2 + 188802 0.68 0.946293
Target:  5'- cGGCCCCGaUCG-CGGCGGcuacUUCAa -3'
miRNA:   3'- aCUGGGGCgAGCaGUCGCCaa--AAGUc -5'
9365 5' -54.6 NC_002512.2 + 76680 0.69 0.921983
Target:  5'- cGACCggagauCCGCUCGUCugaugucgucGGCGGcg-UCAGc -3'
miRNA:   3'- aCUGG------GGCGAGCAG----------UCGCCaaaAGUC- -5'
9365 5' -54.6 NC_002512.2 + 172796 0.69 0.91643
Target:  5'- --gUCCCGCUCgGUCAGCGGagcuugCGGu -3'
miRNA:   3'- acuGGGGCGAG-CAGUCGCCaaaa--GUC- -5'
9365 5' -54.6 NC_002512.2 + 175819 0.69 0.91643
Target:  5'- cGGCUCCGCUCGUCcGUGGc------ -3'
miRNA:   3'- aCUGGGGCGAGCAGuCGCCaaaaguc -5'
9365 5' -54.6 NC_002512.2 + 152936 0.69 0.904639
Target:  5'- nGuCCCCGgUCgGUCAGCGGgag-CGGu -3'
miRNA:   3'- aCuGGGGCgAG-CAGUCGCCaaaaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.