miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9366 5' -55.2 NC_002512.2 + 224139 0.66 0.950715
Target:  5'- ---aCCCGcGCCGGGAGGCg------- -3'
miRNA:   3'- uguaGGGC-CGGUCCUCCGaagauauu -5'
9366 5' -55.2 NC_002512.2 + 200398 0.66 0.950715
Target:  5'- -gAUCUCGGCCGGGAGGg-------- -3'
miRNA:   3'- ugUAGGGCCGGUCCUCCgaagauauu -5'
9366 5' -55.2 NC_002512.2 + 94284 0.67 0.937293
Target:  5'- gGCGUCCaCGGCCGGGGaGCggUCg---- -3'
miRNA:   3'- -UGUAGG-GCCGGUCCUcCGa-AGauauu -5'
9366 5' -55.2 NC_002512.2 + 88446 0.67 0.932347
Target:  5'- gGCGUCCCGGaCCAGcAGGCg------- -3'
miRNA:   3'- -UGUAGGGCC-GGUCcUCCGaagauauu -5'
9366 5' -55.2 NC_002512.2 + 226582 0.67 0.927163
Target:  5'- ---cCCCGGCCAGGAGgGCg------- -3'
miRNA:   3'- uguaGGGCCGGUCCUC-CGaagauauu -5'
9366 5' -55.2 NC_002512.2 + 152744 0.67 0.916078
Target:  5'- gGCGUUCCGGCCGGGAGcCcggUCg---- -3'
miRNA:   3'- -UGUAGGGCCGGUCCUCcGa--AGauauu -5'
9366 5' -55.2 NC_002512.2 + 220979 0.68 0.904044
Target:  5'- gGCcgCCCuGGCCAGGAGGg-UCg---- -3'
miRNA:   3'- -UGuaGGG-CCGGUCCUCCgaAGauauu -5'
9366 5' -55.2 NC_002512.2 + 127822 0.68 0.891076
Target:  5'- -gGUCCCGGCUccGGGAGGUcgUCg---- -3'
miRNA:   3'- ugUAGGGCCGG--UCCUCCGa-AGauauu -5'
9366 5' -55.2 NC_002512.2 + 208902 0.72 0.699643
Target:  5'- -aAUCCCcGCgCGGGAGGCUcCUAUAAa -3'
miRNA:   3'- ugUAGGGcCG-GUCCUCCGAaGAUAUU- -5'
9366 5' -55.2 NC_002512.2 + 181033 0.72 0.679457
Target:  5'- cGCGUCCUGGgCAGGAGGCcgCa---- -3'
miRNA:   3'- -UGUAGGGCCgGUCCUCCGaaGauauu -5'
9366 5' -55.2 NC_002512.2 + 153436 0.74 0.608024
Target:  5'- gGCAggCCGGCCGGGcgcGGCUUUUAUAc -3'
miRNA:   3'- -UGUagGGCCGGUCCu--CCGAAGAUAUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.