miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9367 3' -49.7 NC_002512.2 + 94569 0.66 0.999574
Target:  5'- gCUGAcgccgACCUCGGGGaccgccGGACaggCGAACu -3'
miRNA:   3'- aGACU-----UGGAGCUCUau----CCUGa--GCUUG- -5'
9367 3' -49.7 NC_002512.2 + 181168 0.66 0.999348
Target:  5'- --aGGuCCUCcagcAGGUAGGAgUCGAACg -3'
miRNA:   3'- agaCUuGGAGc---UCUAUCCUgAGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 150666 0.66 0.999348
Target:  5'- --cGAGCCUCGAGGUccgcGGGCgcggCGGu- -3'
miRNA:   3'- agaCUUGGAGCUCUAu---CCUGa---GCUug -5'
9367 3' -49.7 NC_002512.2 + 217598 0.67 0.998817
Target:  5'- ----cGCCUCGGGGgucgucGGcGACUCGGGCg -3'
miRNA:   3'- agacuUGGAGCUCUa-----UC-CUGAGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 37241 0.67 0.998573
Target:  5'- cCUGGugucuUCUCGGGGUguuGGGAUaUCGAGCg -3'
miRNA:   3'- aGACUu----GGAGCUCUA---UCCUG-AGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 124414 0.67 0.998287
Target:  5'- gCUGAACUUCGucGUgcacGGGACgaCGAACg -3'
miRNA:   3'- aGACUUGGAGCucUA----UCCUGa-GCUUG- -5'
9367 3' -49.7 NC_002512.2 + 160698 0.68 0.997955
Target:  5'- --gGGACUUCGGGG-GGGACUUGGGg -3'
miRNA:   3'- agaCUUGGAGCUCUaUCCUGAGCUUg -5'
9367 3' -49.7 NC_002512.2 + 119957 0.68 0.996619
Target:  5'- -gUGGACUUCGuGGcgcUGGGGC-CGAACg -3'
miRNA:   3'- agACUUGGAGCuCU---AUCCUGaGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 186184 0.69 0.993793
Target:  5'- gUCUGGagaacuGCCUCcuGG-AGGGCUCGGGCg -3'
miRNA:   3'- -AGACU------UGGAGcuCUaUCCUGAGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 89575 0.69 0.99285
Target:  5'- cCUuGACCUCGcGGUGGGACaCGAAg -3'
miRNA:   3'- aGAcUUGGAGCuCUAUCCUGaGCUUg -5'
9367 3' -49.7 NC_002512.2 + 225823 0.7 0.986298
Target:  5'- cCUgGGACCUCGAGccgcgGGGGaUCGAGCc -3'
miRNA:   3'- aGA-CUUGGAGCUCua---UCCUgAGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 89169 0.7 0.98456
Target:  5'- uUCUGcagGAUCUCGGcGA-AGGACUCGAAg -3'
miRNA:   3'- -AGAC---UUGGAGCU-CUaUCCUGAGCUUg -5'
9367 3' -49.7 NC_002512.2 + 174573 0.7 0.98456
Target:  5'- uUCUGGACgCUCGAGGUccacGGGaACUgggaGAACg -3'
miRNA:   3'- -AGACUUG-GAGCUCUA----UCC-UGAg---CUUG- -5'
9367 3' -49.7 NC_002512.2 + 109014 0.71 0.980588
Target:  5'- --gGGACCUCGAGGggcGGGCggGGACg -3'
miRNA:   3'- agaCUUGGAGCUCUau-CCUGagCUUG- -5'
9367 3' -49.7 NC_002512.2 + 35827 0.71 0.980588
Target:  5'- gCUGcAGCUuuUCGGGAUGGGACUCcaGAAa -3'
miRNA:   3'- aGAC-UUGG--AGCUCUAUCCUGAG--CUUg -5'
9367 3' -49.7 NC_002512.2 + 74583 0.76 0.864932
Target:  5'- cUCUGGugCUCGAGGccgGGGcccuccgucgGCUCGAGCc -3'
miRNA:   3'- -AGACUugGAGCUCUa--UCC----------UGAGCUUG- -5'
9367 3' -49.7 NC_002512.2 + 213567 0.8 0.648614
Target:  5'- ----cGCCUCGAGAggAGGACUUGAGCg -3'
miRNA:   3'- agacuUGGAGCUCUa-UCCUGAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.