miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9368 3' -47.6 NC_002512.2 + 97553 0.66 0.999982
Target:  5'- uCGAGgc-GGUgCUGGUGCAcUACGUGa- -3'
miRNA:   3'- -GCUUauuCCA-GGCCAUGU-AUGCACag -5'
9368 3' -47.6 NC_002512.2 + 156029 0.66 0.999976
Target:  5'- aCGuccUGGGG-CCaGUGCAUGCGgGUCg -3'
miRNA:   3'- -GCuu-AUUCCaGGcCAUGUAUGCaCAG- -5'
9368 3' -47.6 NC_002512.2 + 178438 0.66 0.999968
Target:  5'- gCGGAUcGGGU-CGGcGCGUucCGUGUCg -3'
miRNA:   3'- -GCUUAuUCCAgGCCaUGUAu-GCACAG- -5'
9368 3' -47.6 NC_002512.2 + 27996 0.66 0.999968
Target:  5'- uCGAG-GAGGUCgCGGUACcgugggACGUGa- -3'
miRNA:   3'- -GCUUaUUCCAG-GCCAUGua----UGCACag -5'
9368 3' -47.6 NC_002512.2 + 90214 0.67 0.999957
Target:  5'- aUGAcgGAGGUagaugCGGUcggACAgggagACGUGUCg -3'
miRNA:   3'- -GCUuaUUCCAg----GCCA---UGUa----UGCACAG- -5'
9368 3' -47.6 NC_002512.2 + 93397 0.67 0.999924
Target:  5'- cCGA--GAGG-CCGGUGaugcaGUGCGUGcCg -3'
miRNA:   3'- -GCUuaUUCCaGGCCAUg----UAUGCACaG- -5'
9368 3' -47.6 NC_002512.2 + 102344 0.68 0.999835
Target:  5'- aCGAGccGGGUCCGG-GCGU-CG-GUCg -3'
miRNA:   3'- -GCUUauUCCAGGCCaUGUAuGCaCAG- -5'
9368 3' -47.6 NC_002512.2 + 151075 0.68 0.999664
Target:  5'- gGGAUGcGGUCuCGGUccgcgccggagACGUgcACGUGUCu -3'
miRNA:   3'- gCUUAUuCCAG-GCCA-----------UGUA--UGCACAG- -5'
9368 3' -47.6 NC_002512.2 + 163922 0.69 0.998816
Target:  5'- cCGAc-GAGGUCgGGUACGaguuucgugacUACGUGUUc -3'
miRNA:   3'- -GCUuaUUCCAGgCCAUGU-----------AUGCACAG- -5'
9368 3' -47.6 NC_002512.2 + 156522 0.71 0.997101
Target:  5'- gCGGGgcgcgGGGGUCCGGcgGCGggaACGUGUa -3'
miRNA:   3'- -GCUUa----UUCCAGGCCa-UGUa--UGCACAg -5'
9368 3' -47.6 NC_002512.2 + 132334 0.71 0.996528
Target:  5'- cCGAAggagAAGGUCCaGGUcugcccgACGUuguagaGCGUGUCg -3'
miRNA:   3'- -GCUUa---UUCCAGG-CCA-------UGUA------UGCACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.