Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9369 | 5' | -46.2 | NC_002512.2 | + | 132174 | 0.76 | 0.975222 |
Target: 5'- -gGCGUCGUGAgCGGGAUAgacggucagcuGCUCGa -3' miRNA: 3'- caUGCAGCAUU-GCCCUAUau---------UGAGCc -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 204074 | 0.75 | 0.984518 |
Target: 5'- -gACGUCGUcGGCGGGAUGgucuACgCGGa -3' miRNA: 3'- caUGCAGCA-UUGCCCUAUau--UGaGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 210425 | 0.71 | 0.999226 |
Target: 5'- -gGCGagGUc-CGGGAUGUGGCgUCGGg -3' miRNA: 3'- caUGCagCAuuGCCCUAUAUUG-AGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 213519 | 0.71 | 0.999226 |
Target: 5'- -gGCGUCGUccggguCGGGGUGcc-CUCGGa -3' miRNA: 3'- caUGCAGCAuu----GCCCUAUauuGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 33038 | 0.7 | 0.999674 |
Target: 5'- -cGgGUUGggAACGGGGUGUGGCUCc- -3' miRNA: 3'- caUgCAGCa-UUGCCCUAUAUUGAGcc -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 218108 | 0.7 | 0.999674 |
Target: 5'- -gGCGUCGcgccCGGGGUc--GCUCGGg -3' miRNA: 3'- caUGCAGCauu-GCCCUAuauUGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 16694 | 0.7 | 0.999841 |
Target: 5'- ---aGUCGUAuCGGGGUAUAauaACUCa- -3' miRNA: 3'- caugCAGCAUuGCCCUAUAU---UGAGcc -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 46378 | 0.69 | 0.999927 |
Target: 5'- cGUACGUgGUAAUgaGGGcgAaAAUUCGGa -3' miRNA: 3'- -CAUGCAgCAUUG--CCCuaUaUUGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 154497 | 0.69 | 0.999927 |
Target: 5'- uUugGUCGUGGgcgcguccuCGGGcgAUGACUCa- -3' miRNA: 3'- cAugCAGCAUU---------GCCCuaUAUUGAGcc -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 202174 | 0.69 | 0.999958 |
Target: 5'- cGUG-GUCGUGACGGGAg--AACgcgcguucCGGa -3' miRNA: 3'- -CAUgCAGCAUUGCCCUauaUUGa-------GCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 224593 | 0.68 | 0.999969 |
Target: 5'- uUACGUCagGgcGCGGGAcgcgGUGccgaccggGCUCGGg -3' miRNA: 3'- cAUGCAG--CauUGCCCUa---UAU--------UGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 186674 | 0.68 | 0.999969 |
Target: 5'- -gACGUCGUGcgauACGGcGuccggAACUCGGc -3' miRNA: 3'- caUGCAGCAU----UGCC-Cuaua-UUGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 220862 | 0.68 | 0.999977 |
Target: 5'- cUACGUCGUccGCGGGGc----CUCGGc -3' miRNA: 3'- cAUGCAGCAu-UGCCCUauauuGAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 212146 | 0.68 | 0.999977 |
Target: 5'- uGUGCGUCG--GCGGGcacUGGCggCGGg -3' miRNA: 3'- -CAUGCAGCauUGCCCuauAUUGa-GCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 197875 | 0.68 | 0.999988 |
Target: 5'- cUGCGgggcaaGUGACGGGAcccgguuCUCGGg -3' miRNA: 3'- cAUGCag----CAUUGCCCUauauu--GAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 164251 | 0.68 | 0.999988 |
Target: 5'- -gGCGcCGUGGCGGGGgccg--UCGGg -3' miRNA: 3'- caUGCaGCAUUGCCCUauauugAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 179797 | 0.67 | 0.999997 |
Target: 5'- gGUcCGUCGUGuGCGGGucgaacagGUAGgUCGGu -3' miRNA: 3'- -CAuGCAGCAU-UGCCCua------UAUUgAGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 226710 | 0.67 | 0.999997 |
Target: 5'- -gGCGUCGagcGACGGGA---GGCcgCGGg -3' miRNA: 3'- caUGCAGCa--UUGCCCUauaUUGa-GCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 217899 | 0.66 | 0.999999 |
Target: 5'- -cGCGUCGUcgAGCGGcGGUAcGAgaCGGu -3' miRNA: 3'- caUGCAGCA--UUGCC-CUAUaUUgaGCC- -5' |
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9369 | 5' | -46.2 | NC_002512.2 | + | 200348 | 0.66 | 0.999999 |
Target: 5'- --cUGUCGgcgGACGGGGg--GACggggCGGg -3' miRNA: 3'- cauGCAGCa--UUGCCCUauaUUGa---GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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