miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 3' -56.6 NC_002512.2 + 227981 0.66 0.962208
Target:  5'- gGCCCCGGcgccgaGGGCCGaGGG-CCg -3'
miRNA:   3'- gCGGGGCUuuuca-CCUGGUgCCCaGG- -5'
9370 3' -56.6 NC_002512.2 + 186815 0.66 0.962208
Target:  5'- gCGCCCCGGGAccGGUGccuCgGCGaGGcCCu -3'
miRNA:   3'- -GCGGGGCUUU--UCACcu-GgUGC-CCaGG- -5'
9370 3' -56.6 NC_002512.2 + 181580 0.66 0.962208
Target:  5'- cCGUCUgCGGcggcAG-GGGCgGCGGGUCCg -3'
miRNA:   3'- -GCGGG-GCUuu--UCaCCUGgUGCCCAGG- -5'
9370 3' -56.6 NC_002512.2 + 130493 0.66 0.960196
Target:  5'- cCGCCCCGGGAGuccGGACCccgAcgcuggcggagagcuCGGGUCg -3'
miRNA:   3'- -GCGGGGCUUUUca-CCUGG---U---------------GCCCAGg -5'
9370 3' -56.6 NC_002512.2 + 164251 0.66 0.958815
Target:  5'- gGCgCCGu--GGcggGGGCCGuCGGGUCg -3'
miRNA:   3'- gCGgGGCuuuUCa--CCUGGU-GCCCAGg -5'
9370 3' -56.6 NC_002512.2 + 123153 0.66 0.958815
Target:  5'- cCGCCggggCCGAGGAGgcGGACaggaGCGcGGUCa -3'
miRNA:   3'- -GCGG----GGCUUUUCa-CCUGg---UGC-CCAGg -5'
9370 3' -56.6 NC_002512.2 + 213207 0.66 0.958815
Target:  5'- -aCCCUGGucug-GGACCGCcGGGUCg -3'
miRNA:   3'- gcGGGGCUuuucaCCUGGUG-CCCAGg -5'
9370 3' -56.6 NC_002512.2 + 153236 0.66 0.956681
Target:  5'- cCGUCCCGGGcucccUGGcaaacccgaugcgauGCgGCGGGUCCu -3'
miRNA:   3'- -GCGGGGCUUuuc--ACC---------------UGgUGCCCAGG- -5'
9370 3' -56.6 NC_002512.2 + 104979 0.66 0.951414
Target:  5'- cCGCCUCGAGguAGGggaGGuaGCC-CGGGuUCCg -3'
miRNA:   3'- -GCGGGGCUU--UUCa--CC--UGGuGCCC-AGG- -5'
9370 3' -56.6 NC_002512.2 + 219941 0.66 0.951414
Target:  5'- aCGCgCgGggGagGGUGGAUCcccCGGGUCg -3'
miRNA:   3'- -GCGgGgCuuU--UCACCUGGu--GCCCAGg -5'
9370 3' -56.6 NC_002512.2 + 226891 0.66 0.951414
Target:  5'- aGgCCCGGGAcc-GGGCCACGcGGgaggCCa -3'
miRNA:   3'- gCgGGGCUUUucaCCUGGUGC-CCa---GG- -5'
9370 3' -56.6 NC_002512.2 + 122817 0.66 0.951414
Target:  5'- cCGcCCCCGAGaacGAGaUGGagGCCGCGacGGUCg -3'
miRNA:   3'- -GC-GGGGCUU---UUC-ACC--UGGUGC--CCAGg -5'
9370 3' -56.6 NC_002512.2 + 123573 0.66 0.951414
Target:  5'- aGCCgCCGAA----GGcGCUGCGGGUCUg -3'
miRNA:   3'- gCGG-GGCUUuucaCC-UGGUGCCCAGG- -5'
9370 3' -56.6 NC_002512.2 + 218971 0.66 0.9474
Target:  5'- uCGCCggCUGGGAGGUccGGcCCG-GGGUCCg -3'
miRNA:   3'- -GCGG--GGCUUUUCA--CCuGGUgCCCAGG- -5'
9370 3' -56.6 NC_002512.2 + 158536 0.66 0.9474
Target:  5'- uCGUcaCCCGGcuGGUGGACCugcuggUGGG-CCg -3'
miRNA:   3'- -GCG--GGGCUuuUCACCUGGu-----GCCCaGG- -5'
9370 3' -56.6 NC_002512.2 + 202006 0.66 0.9474
Target:  5'- uCGUCUCGGAcAGGUGG-CgGggcCGGGUCCc -3'
miRNA:   3'- -GCGGGGCUU-UUCACCuGgU---GCCCAGG- -5'
9370 3' -56.6 NC_002512.2 + 202418 0.66 0.9474
Target:  5'- gCGCgCgGAAcAGUGGcgugacCCGCGGaGUCCc -3'
miRNA:   3'- -GCGgGgCUUuUCACCu-----GGUGCC-CAGG- -5'
9370 3' -56.6 NC_002512.2 + 225782 0.66 0.946987
Target:  5'- -uUCCCGAGGcugcgccGGccGGGCCGCGGGcggCCg -3'
miRNA:   3'- gcGGGGCUUU-------UCa-CCUGGUGCCCa--GG- -5'
9370 3' -56.6 NC_002512.2 + 132002 0.66 0.943173
Target:  5'- cCGCCCCGGGcgccGGGgGGACCucgGCGGcgacGUCg -3'
miRNA:   3'- -GCGGGGCUU----UUCaCCUGG---UGCC----CAGg -5'
9370 3' -56.6 NC_002512.2 + 107928 0.67 0.938731
Target:  5'- -aUCCCGAcc-GUGaGcgaacaucaucGCCGCGGGUCCg -3'
miRNA:   3'- gcGGGGCUuuuCAC-C-----------UGGUGCCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.