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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9370 | 5' | -57 | NC_002512.2 | + | 202087 | 0.67 | 0.895171 |
Target: 5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3' miRNA: 3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 147444 | 0.67 | 0.901379 |
Target: 5'- uCgGGAGCGGGaccgaCGCCCCCUCGuccccuccgccGCGg -3' miRNA: 3'- -GgCCUCGUUCca---GUGGGGGAGU-----------UGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 189186 | 0.67 | 0.901379 |
Target: 5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3' miRNA: 3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 156932 | 0.67 | 0.901379 |
Target: 5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3' miRNA: 3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 220131 | 0.67 | 0.907373 |
Target: 5'- gCGGGGCGgcGGGUCcggcuccgccGCCCCCaagGGCGUc -3' miRNA: 3'- gGCCUCGU--UCCAG----------UGGGGGag-UUGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 108433 | 0.67 | 0.907373 |
Target: 5'- cCCGGGGCcgggggccggGGGGUCcCuCCCCgggCGGCGc -3' miRNA: 3'- -GGCCUCG----------UUCCAGuG-GGGGa--GUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 128136 | 0.67 | 0.907373 |
Target: 5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3' miRNA: 3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 131914 | 0.67 | 0.907373 |
Target: 5'- cCCGGGGCGuaccGG-CGCCCCUgcugCAcgggaGCGUa -3' miRNA: 3'- -GGCCUCGUu---CCaGUGGGGGa---GU-----UGCA- -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 197660 | 0.67 | 0.907373 |
Target: 5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3' miRNA: 3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5' |
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9370 | 5' | -57 | NC_002512.2 | + | 215187 | 0.66 | 0.947448 |
Target: 5'- -gGGAGCGgacgcGGGUCuACCUCUUCGucgGCGg -3' miRNA: 3'- ggCCUCGU-----UCCAG-UGGGGGAGU---UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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