miRNA: 3'- -AGUuaCuuUAGaaCCGGCUa----CCUAGa -5'
miRNA: 3'- aGUUACU------------UUAGA----ACCGGCU----ACCUAGa -5'
miRNA: 3'- aGUUACUUUAGaaCCGGCUAccUAGa -5'
miRNA: 3'- -AGUUaCuuUAGaaCCGGCUa-CCUAGa -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9371 | 3' | -46.5 | NC_002512.2 | + | 217779 | 0.66 | 0.999997 |
|
Target: 5'- gUCGccGggGUCgcGGCCGGcuggcGGAUCg -3' miRNA: 3'- -AGUuaCuuUAGaaCCGGCUa----CCUAGa -5' |
|||||||
| 9371 | 3' | -46.5 | NC_002512.2 | + | 40776 | 0.66 | 0.999997 |
|
Target: 5'- gCGAUGAuggacuauguagAAUUUcgccUGGCCGAagaaUGGGUCg -3' miRNA: 3'- aGUUACU------------UUAGA----ACCGGCU----ACCUAGa -5' |
|||||||
| 9371 | 3' | -46.5 | NC_002512.2 | + | 47727 | 0.69 | 0.999673 |
|
Target: 5'- cCGAUGGAAUCggGGCCGGUaaAUCc -3' miRNA: 3'- aGUUACUUUAGaaCCGGCUAccUAGa -5' |
|||||||
| 9371 | 3' | -46.5 | NC_002512.2 | + | 195088 | 0.71 | 0.997513 |
|
Target: 5'- cUCGA-GggGUCgaGGCCGAggGGAUUg -3' miRNA: 3'- -AGUUaCuuUAGaaCCGGCUa-CCUAGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home