miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 79241 0.68 0.843215
Target:  5'- -aGAGGCCGUCGGCCGccGGCcucucccgauuuGGCa- -3'
miRNA:   3'- ggUUCCGGUAGCCGGUucUCG------------UCGca -5'
9371 5' -56.9 NC_002512.2 + 149512 0.68 0.843215
Target:  5'- -aAAGGCCG-CGGCCG-GAGCGGg-- -3'
miRNA:   3'- ggUUCCGGUaGCCGGUuCUCGUCgca -5'
9371 5' -56.9 NC_002512.2 + 120932 0.68 0.835261
Target:  5'- aCCcGGGCgAcccgaCGGgCAAGGGCGGCGg -3'
miRNA:   3'- -GGuUCCGgUa----GCCgGUUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 112901 0.68 0.835261
Target:  5'- ---cGGCCGUCGGCCcgcccGGAcGgGGCGUc -3'
miRNA:   3'- gguuCCGGUAGCCGGu----UCU-CgUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 94117 0.68 0.858571
Target:  5'- gCCA--GCCucucGUCGGCCAGGAcgcggaugacGCGGCGg -3'
miRNA:   3'- -GGUucCGG----UAGCCGGUUCU----------CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 218294 0.68 0.858571
Target:  5'- cUCGGGGUCccCGGCCcuGGGCGGCc- -3'
miRNA:   3'- -GGUUCCGGuaGCCGGuuCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 201459 0.68 0.858571
Target:  5'- cUCGAGGugguccCCGUCGGCCGGGGuGCAGa-- -3'
miRNA:   3'- -GGUUCC------GGUAGCCGGUUCU-CGUCgca -5'
9371 5' -56.9 NC_002512.2 + 59471 0.68 0.873152
Target:  5'- uCCGAGGCCcUC-GCCAGcgggucucGAGCGGCc- -3'
miRNA:   3'- -GGUUCCGGuAGcCGGUU--------CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 226690 0.68 0.873152
Target:  5'- gCC-GGGCCGUCGcCCGc-GGCGGCGUc -3'
miRNA:   3'- -GGuUCCGGUAGCcGGUucUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 158943 0.68 0.873152
Target:  5'- gCCGGcGGCCucUCGGUCAGcaacGGCGGCGa -3'
miRNA:   3'- -GGUU-CCGGu-AGCCGGUUc---UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 90650 0.68 0.865961
Target:  5'- gCCGcGGCCG-CGGUCucGGAGuCGGCGg -3'
miRNA:   3'- -GGUuCCGGUaGCCGGu-UCUC-GUCGCa -5'
9371 5' -56.9 NC_002512.2 + 223876 0.68 0.865231
Target:  5'- -gGAGGCCGaggaggaGGCCGaggaggaggagcgGGAGCGGCGc -3'
miRNA:   3'- ggUUCCGGUag-----CCGGU-------------UCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 222877 0.68 0.865231
Target:  5'- gCAAGGCCcugCGGCUcuccugcgacuucGAGGGCuccuGCGUc -3'
miRNA:   3'- gGUUCCGGua-GCCGG-------------UUCUCGu---CGCA- -5'
9371 5' -56.9 NC_002512.2 + 154405 0.68 0.865231
Target:  5'- uCgGAGGCgAUCGGgguCCGAGgcaagauGGCGGCGUc -3'
miRNA:   3'- -GgUUCCGgUAGCC---GGUUC-------UCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 90686 0.68 0.863765
Target:  5'- gCCAGGGCCAgguccucgacggcgUCGGCgugaCAGGGGUccaccauguGGCGg -3'
miRNA:   3'- -GGUUCCGGU--------------AGCCG----GUUCUCG---------UCGCa -5'
9371 5' -56.9 NC_002512.2 + 130192 0.69 0.827133
Target:  5'- aCgAGGGCCcgucgcaugAUCGGCCAguGGuccucGGCGGCGg -3'
miRNA:   3'- -GgUUCCGG---------UAGCCGGU--UC-----UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 196146 0.69 0.827133
Target:  5'- uCCAGGGCCGcuccucgcucCGGUCGAcGAGgGGCGa -3'
miRNA:   3'- -GGUUCCGGUa---------GCCGGUU-CUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 205377 0.69 0.827133
Target:  5'- -gAAGGCgGUCaGGcCCAGGAagGCGGCGg -3'
miRNA:   3'- ggUUCCGgUAG-CC-GGUUCU--CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 217782 0.69 0.827133
Target:  5'- gCCGGGGUCG-CGGCCGgcuggcGGAuCGGCGUc -3'
miRNA:   3'- -GGUUCCGGUaGCCGGU------UCUcGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 207007 0.69 0.818837
Target:  5'- gCGGGGUCAgcauggUGGCCcAGuuguGCAGCGUg -3'
miRNA:   3'- gGUUCCGGUa-----GCCGGuUCu---CGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.