miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 3' -53.2 NC_002512.2 + 152704 0.66 0.992386
Target:  5'- gCGUCCcCGG-UCGGg---GUgCGGCg -3'
miRNA:   3'- gGCAGGcGCCuAGCCauuaUAgGCCG- -5'
9372 3' -53.2 NC_002512.2 + 185996 0.67 0.99133
Target:  5'- gUCG-CCGUGG-UgGGUc--GUCCGGCa -3'
miRNA:   3'- -GGCaGGCGCCuAgCCAuuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 154749 0.67 0.99133
Target:  5'- gCGUCCGaCGGcgucgCGGUGcccgucuccccGUGUCCgccaGGCg -3'
miRNA:   3'- gGCAGGC-GCCua---GCCAU-----------UAUAGG----CCG- -5'
9372 3' -53.2 NC_002512.2 + 155019 0.67 0.99133
Target:  5'- gUCGUCC-CGGGUgCGGU----UCCGGa -3'
miRNA:   3'- -GGCAGGcGCCUA-GCCAuuauAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 115551 0.67 0.99133
Target:  5'- aCGUgCUGCGGAUCGGcGAgcggagCgUGGCg -3'
miRNA:   3'- gGCA-GGCGCCUAGCCaUUaua---G-GCCG- -5'
9372 3' -53.2 NC_002512.2 + 157555 0.67 0.991219
Target:  5'- aCCGUCCcgcaggugucccGCuGGGugaaccagcacuuUCaGGUGAUcgCCGGCg -3'
miRNA:   3'- -GGCAGG------------CG-CCU-------------AG-CCAUUAuaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 138975 0.67 0.990162
Target:  5'- cCCGUUCGCGGc-CGcca--GUCCGGCc -3'
miRNA:   3'- -GGCAGGCGCCuaGCcauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 120270 0.67 0.990162
Target:  5'- aCCGcCgGCuGAUgaCGGUGA--UCCGGCu -3'
miRNA:   3'- -GGCaGgCGcCUA--GCCAUUauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 142553 0.67 0.989915
Target:  5'- aCCGcgcaCCGCGGAUCGGUccaccucaucGUCUGcGUg -3'
miRNA:   3'- -GGCa---GGCGCCUAGCCAuua-------UAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 150949 0.67 0.988875
Target:  5'- uCCGgcggCCGCGGAcUCGG-AGg--CgGGCu -3'
miRNA:   3'- -GGCa---GGCGCCU-AGCCaUUauaGgCCG- -5'
9372 3' -53.2 NC_002512.2 + 189036 0.67 0.988875
Target:  5'- gUGUCUGUcGuUCGGUAAUGUccucggagcggCCGGCg -3'
miRNA:   3'- gGCAGGCGcCuAGCCAUUAUA-----------GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 222524 0.67 0.988875
Target:  5'- cCCG-CCGCGGccgccgucgCGGUGGg--CCGGg -3'
miRNA:   3'- -GGCaGGCGCCua-------GCCAUUauaGGCCg -5'
9372 3' -53.2 NC_002512.2 + 200308 0.67 0.988602
Target:  5'- cUCGUCCGCccucGGGgagCGGcuucccgCCGGCg -3'
miRNA:   3'- -GGCAGGCG----CCUa--GCCauuaua-GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 220866 0.67 0.98746
Target:  5'- gUCGUCCGCGGGgccUCGGcgcucuccAUCgUGGCc -3'
miRNA:   3'- -GGCAGGCGCCU---AGCCauua----UAG-GCCG- -5'
9372 3' -53.2 NC_002512.2 + 40571 0.67 0.98746
Target:  5'- gCGUCCGCGaaccgCGGUGAagaagauccUGUCCGcuuGCg -3'
miRNA:   3'- gGCAGGCGCcua--GCCAUU---------AUAGGC---CG- -5'
9372 3' -53.2 NC_002512.2 + 137540 0.67 0.98746
Target:  5'- gCGUCCGCGGcgaCGGguucgGUCgCGGa -3'
miRNA:   3'- gGCAGGCGCCua-GCCauua-UAG-GCCg -5'
9372 3' -53.2 NC_002512.2 + 158903 0.67 0.98746
Target:  5'- cCCGUCCuCGGucgCGGccgAGUAcggcUUCGGCg -3'
miRNA:   3'- -GGCAGGcGCCua-GCCa--UUAU----AGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 200543 0.67 0.98746
Target:  5'- uCCGUCuCGCGGucgCGGUA---UCgGGg -3'
miRNA:   3'- -GGCAG-GCGCCua-GCCAUuauAGgCCg -5'
9372 3' -53.2 NC_002512.2 + 216817 0.67 0.98746
Target:  5'- gCGU-CGCGGGUCGGgua----CGGCu -3'
miRNA:   3'- gGCAgGCGCCUAGCCauuauagGCCG- -5'
9372 3' -53.2 NC_002512.2 + 224924 0.67 0.987161
Target:  5'- uCCGUCgCGgGGAcCGGguccgugCCGGUg -3'
miRNA:   3'- -GGCAG-GCgCCUaGCCauuaua-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.