miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 171655 0.66 0.995069
Target:  5'- gGCCCuGUUGC-GGGAcaucuACGcgCGCGGg -3'
miRNA:   3'- aCGGGcCAGUGuUUCU-----UGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 195074 0.66 0.995069
Target:  5'- cGUCCGGUCGgGGAcucGAGgGGUCGaGGc -3'
miRNA:   3'- aCGGGCCAGUgUUU---CUUgCUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 198123 0.66 0.995069
Target:  5'- gGCCCccuugaGGUUgGCGAAGcGCGAgccccgCGCGGg -3'
miRNA:   3'- aCGGG------CCAG-UGUUUCuUGCUa-----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 140981 0.66 0.995069
Target:  5'- aUGUCCGcUCcCGAacGGAccGCGAUCGCGa -3'
miRNA:   3'- -ACGGGCcAGuGUU--UCU--UGCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 102884 0.66 0.99514
Target:  5'- cGCCCGGaccgacuccaccgugCGCcuGGcGCGGUCGaCGGc -3'
miRNA:   3'- aCGGGCCa--------------GUGuuUCuUGCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 214181 0.66 0.994309
Target:  5'- aGCCCGucaucGUCGCGGAGGAgGAccCGCu- -3'
miRNA:   3'- aCGGGC-----CAGUGUUUCUUgCUa-GCGcc -5'
9373 3' -52.9 NC_002512.2 + 49626 0.66 0.994309
Target:  5'- aGCauucaCaGUCACAGGGAG-GAUCGuCGGg -3'
miRNA:   3'- aCGg----GcCAGUGUUUCUUgCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 191044 0.67 0.988985
Target:  5'- gGCgCGGcgCACGuGGAcCGGUCGCGc -3'
miRNA:   3'- aCGgGCCa-GUGUuUCUuGCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 111347 0.67 0.990279
Target:  5'- cGuCCCGGgcgCGCAcGAGGACGAccCGgGGc -3'
miRNA:   3'- aC-GGGCCa--GUGU-UUCUUGCUa-GCgCC- -5'
9373 3' -52.9 NC_002512.2 + 134012 0.67 0.990279
Target:  5'- -cCCCGG--ACGAAGAucugcGCGGUgGCGGa -3'
miRNA:   3'- acGGGCCagUGUUUCU-----UGCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 146844 0.66 0.991451
Target:  5'- cGCCUGGcC-CAGGGugcuCGAgcucgCGCGGg -3'
miRNA:   3'- aCGGGCCaGuGUUUCuu--GCUa----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 223709 0.66 0.991451
Target:  5'- cUGgCCGGcgacUCGCAcgggGAGGACGAccgggagaccgUCGUGGa -3'
miRNA:   3'- -ACgGGCC----AGUGU----UUCUUGCU-----------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 206141 0.66 0.991451
Target:  5'- cGUCCGGUCGCca--GACGGUCaUGGc -3'
miRNA:   3'- aCGGGCCAGUGuuucUUGCUAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 11733 0.66 0.992508
Target:  5'- gGuCCCGGUCuc-GAGGACGuAUC-CGGa -3'
miRNA:   3'- aC-GGGCCAGuguUUCUUGC-UAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 106723 0.66 0.992508
Target:  5'- gGCCuCGGcCuCGGc-GGCGAUCGCGGc -3'
miRNA:   3'- aCGG-GCCaGuGUUucUUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 178554 0.66 0.992508
Target:  5'- aGCCC-GUCACGAuc--CGGUUGUGGu -3'
miRNA:   3'- aCGGGcCAGUGUUucuuGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 184512 0.66 0.992508
Target:  5'- gGCCCGcGUCcuCGucGcAGCaGUCGCGGg -3'
miRNA:   3'- aCGGGC-CAGu-GUuuC-UUGcUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 192073 0.66 0.993458
Target:  5'- gGCUCGGaCGCGucccugacccAGAGCGAggGCGGc -3'
miRNA:   3'- aCGGGCCaGUGUu---------UCUUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 227654 0.66 0.993458
Target:  5'- cGCCCgGGUC-CGGAGGAaGAgcgGCGGc -3'
miRNA:   3'- aCGGG-CCAGuGUUUCUUgCUag-CGCC- -5'
9373 3' -52.9 NC_002512.2 + 171718 0.66 0.993458
Target:  5'- -cUCCGGUaGC-GAGAACGAUCG-GGa -3'
miRNA:   3'- acGGGCCAgUGuUUCUUGCUAGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.