Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9373 | 5' | -54.8 | NC_002512.2 | + | 106208 | 0.68 | 0.933206 |
Target: 5'- cCGCCGCGacgGAcCGCUUccCCGAGCCc- -3' miRNA: 3'- -GCGGCGCaa-CU-GCGAGa-GGUUUGGuu -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 201122 | 0.68 | 0.933206 |
Target: 5'- gGUCGCGgUGGCGCUCcaggUCC--ACCAGu -3' miRNA: 3'- gCGGCGCaACUGCGAG----AGGuuUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 110395 | 0.68 | 0.922783 |
Target: 5'- gGCCGUGUacaUG-UGCUCgCCGGACCGc -3' miRNA: 3'- gCGGCGCA---ACuGCGAGaGGUUUGGUu -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 221520 | 0.68 | 0.905396 |
Target: 5'- gCGCCGCGgauccucGGCGCUC-CCGccuACCGc -3' miRNA: 3'- -GCGGCGCaa-----CUGCGAGaGGUu--UGGUu -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 164928 | 0.69 | 0.885945 |
Target: 5'- uCGCCGCGU--AUGUUCUUCGagGACCGGg -3' miRNA: 3'- -GCGGCGCAacUGCGAGAGGU--UUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 131367 | 0.7 | 0.86452 |
Target: 5'- aGCCgGCGcgGugGCUCUCgCAGuagGCCAGc -3' miRNA: 3'- gCGG-CGCaaCugCGAGAG-GUU---UGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 74566 | 0.7 | 0.85696 |
Target: 5'- cCGCCGCGaccugGGCGCUCuggugcUCgAGGCCGGg -3' miRNA: 3'- -GCGGCGCaa---CUGCGAG------AGgUUUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 173820 | 0.7 | 0.833113 |
Target: 5'- uGuuGCG--GAUGCUCUCCAuGGCCAGg -3' miRNA: 3'- gCggCGCaaCUGCGAGAGGU-UUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 221842 | 0.7 | 0.824796 |
Target: 5'- -cCCGCGggGGCGC-CUCgGGACCGGg -3' miRNA: 3'- gcGGCGCaaCUGCGaGAGgUUUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 224826 | 0.71 | 0.816308 |
Target: 5'- aCGCCGCGggcgggcugGACGCguauacCUCCAcGGCCAu -3' miRNA: 3'- -GCGGCGCaa-------CUGCGa-----GAGGU-UUGGUu -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 158312 | 0.72 | 0.762224 |
Target: 5'- gGCCGCGgucguccGGCGCgaguccgcgCUCCGGACCGu -3' miRNA: 3'- gCGGCGCaa-----CUGCGa--------GAGGUUUGGUu -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 220867 | 0.74 | 0.633653 |
Target: 5'- uCGuCCGCGgggccucGGCGCUCUCCAucguGGCCGAc -3' miRNA: 3'- -GC-GGCGCaa-----CUGCGAGAGGU----UUGGUU- -5' |
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9373 | 5' | -54.8 | NC_002512.2 | + | 150912 | 0.78 | 0.430613 |
Target: 5'- gGCCGCGgacGACGCUaagUCCGAGCCGGa -3' miRNA: 3'- gCGGCGCaa-CUGCGAg--AGGUUUGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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