miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 3' -52.4 NC_002512.2 + 153138 0.66 0.995003
Target:  5'- gGACGgGC-GAUCCgGGUCGcGGUCCgGa -3'
miRNA:   3'- gUUGUgUGaUUAGG-CCAGU-CCAGGgC- -5'
9375 3' -52.4 NC_002512.2 + 105066 0.66 0.993629
Target:  5'- cCGGCACGCaGccgaagaagccggcgGUCgGGUCgacgugucuccccGGGUCCCGg -3'
miRNA:   3'- -GUUGUGUGaU---------------UAGgCCAG-------------UCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 91899 0.66 0.992385
Target:  5'- gCGGCGCACggc-CCGcUCGGG-CCCGg -3'
miRNA:   3'- -GUUGUGUGauuaGGCcAGUCCaGGGC- -5'
9375 3' -52.4 NC_002512.2 + 153786 0.67 0.991303
Target:  5'- gAGCAgUACggaauAUCCGGUCAGGagagUUCCGu -3'
miRNA:   3'- gUUGU-GUGau---UAGGCCAGUCC----AGGGC- -5'
9375 3' -52.4 NC_002512.2 + 158014 0.67 0.988778
Target:  5'- uCGACGCcCUGGUCCGGUUcc-UCCUGg -3'
miRNA:   3'- -GUUGUGuGAUUAGGCCAGuccAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 216674 0.69 0.972398
Target:  5'- gCAGCuGCACgUAcgcgaaguacaucGUCuCGGUCAGGUCCuCGa -3'
miRNA:   3'- -GUUG-UGUG-AU-------------UAG-GCCAGUCCAGG-GC- -5'
9375 3' -52.4 NC_002512.2 + 127793 0.69 0.969855
Target:  5'- -cGCACAggGAgacgugCCGGaagaacUCGGGUCCCGg -3'
miRNA:   3'- guUGUGUgaUUa-----GGCC------AGUCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 168422 0.69 0.969855
Target:  5'- ---gAUGCUcacCCGGUaCAGGUCCCGg -3'
miRNA:   3'- guugUGUGAuuaGGCCA-GUCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 96880 0.69 0.966838
Target:  5'- gCGGCGCACUuc-CCGGgggcCGGGUUCCc -3'
miRNA:   3'- -GUUGUGUGAuuaGGCCa---GUCCAGGGc -5'
9375 3' -52.4 NC_002512.2 + 92923 0.69 0.966838
Target:  5'- gCAGCACAUUAa--CGGUUAGGggggCCCu -3'
miRNA:   3'- -GUUGUGUGAUuagGCCAGUCCa---GGGc -5'
9375 3' -52.4 NC_002512.2 + 90132 0.69 0.960177
Target:  5'- aCAGCACcgGCcAGUagaCGGaCAGGUCCCGc -3'
miRNA:   3'- -GUUGUG--UGaUUAg--GCCaGUCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 208583 0.69 0.959821
Target:  5'- uCGACGCGCagcgGGUCCGGgacgaggUCgAGGUUCCGu -3'
miRNA:   3'- -GUUGUGUGa---UUAGGCC-------AG-UCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 153337 0.7 0.956522
Target:  5'- -cGCugGgCcGGUCCGGgucggCGGGUCCCGc -3'
miRNA:   3'- guUGugU-GaUUAGGCCa----GUCCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 152733 0.7 0.956522
Target:  5'- gGACACGCaGAggcguUCCGGcCGGGagCCCGg -3'
miRNA:   3'- gUUGUGUGaUU-----AGGCCaGUCCa-GGGC- -5'
9375 3' -52.4 NC_002512.2 + 102474 0.7 0.934852
Target:  5'- gGGCGCGCccGUCgCGGUgGcGGUCCCGc -3'
miRNA:   3'- gUUGUGUGauUAG-GCCAgU-CCAGGGC- -5'
9375 3' -52.4 NC_002512.2 + 126584 0.73 0.851515
Target:  5'- gAACGCcCgGAUCUGGgaCAGGUCCCGg -3'
miRNA:   3'- gUUGUGuGaUUAGGCCa-GUCCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.