Results 41 - 60 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 150000 | 0.7 | 0.759662 |
Target: 5'- cGCGGGaACCCACGccggggcucucuuccUCCuccgaggacgaGGggGCCGGg -3' miRNA: 3'- aCGCCC-UGGGUGC---------------AGG-----------UCuuUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 149230 | 0.67 | 0.905071 |
Target: 5'- cGCGGGACCgACGgacCCGGc-GCCGc- -3' miRNA: 3'- aCGCCCUGGgUGCa--GGUCuuUGGUca -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 149141 | 0.7 | 0.774309 |
Target: 5'- -cCGGGACCCGgGaccgCCGcGggGCCGGUg -3' miRNA: 3'- acGCCCUGGGUgCa---GGU-CuuUGGUCA- -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 148426 | 0.69 | 0.817959 |
Target: 5'- cUGCGGGACCgC-CGggggaggaCGGggGCCGGg -3' miRNA: 3'- -ACGCCCUGG-GuGCag------GUCuuUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 148131 | 0.67 | 0.898932 |
Target: 5'- gGUGGuGACCCACGaCCAGcucauGAACaCGGa -3' miRNA: 3'- aCGCC-CUGGGUGCaGGUC-----UUUG-GUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 147449 | 0.66 | 0.941358 |
Target: 5'- aGCGGGACCgACGcccccucguccccUCCGccgcGGGACCAc- -3' miRNA: 3'- aCGCCCUGGgUGC-------------AGGU----CUUUGGUca -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 146870 | 0.71 | 0.698703 |
Target: 5'- cGCGGGGCCacuacCGcCCGGAGGcCCAGg -3' miRNA: 3'- aCGCCCUGGgu---GCaGGUCUUU-GGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 145798 | 0.67 | 0.916687 |
Target: 5'- gGUGGaGGCCCGCcagaaGUUCuGGGACCAGc -3' miRNA: 3'- aCGCC-CUGGGUG-----CAGGuCUUUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 145615 | 0.66 | 0.925857 |
Target: 5'- gGCGGGcguucgGCCCgcugcccgccuuccGCGUCgAGAuGCCGGg -3' miRNA: 3'- aCGCCC------UGGG--------------UGCAGgUCUuUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 134608 | 0.66 | 0.926893 |
Target: 5'- cGaCGGGAacccgacCCCGcCGUUCAGGAGCCGc- -3' miRNA: 3'- aC-GCCCU-------GGGU-GCAGGUCUUUGGUca -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 133599 | 0.66 | 0.926376 |
Target: 5'- gGCGGcGGCCCGCGgcagCCcccccgccuGCCGGUg -3' miRNA: 3'- aCGCC-CUGGGUGCa---GGucuu-----UGGUCA- -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 132414 | 0.66 | 0.93723 |
Target: 5'- gGgGGGAUcgaCCGCGgcgaUCCAGA-ACCGGUu -3' miRNA: 3'- aCgCCCUG---GGUGC----AGGUCUuUGGUCA- -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 132016 | 0.7 | 0.752235 |
Target: 5'- gGgGGGACCUcgGCGgcgacgucgucggCCAGGGACCGGa -3' miRNA: 3'- aCgCCCUGGG--UGCa------------GGUCUUUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 129242 | 0.67 | 0.904467 |
Target: 5'- cGCGGGACUgcugCGCGgggcgaUCCAGGacuagggGACCGGg -3' miRNA: 3'- aCGCCCUGG----GUGC------AGGUCU-------UUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 128391 | 0.67 | 0.905071 |
Target: 5'- gGCGGcgGACCC-CGUCUcGAGcCCGGUg -3' miRNA: 3'- aCGCC--CUGGGuGCAGGuCUUuGGUCA- -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 128263 | 0.76 | 0.448409 |
Target: 5'- aGCGGcGACUCGCGUCCcGgcGCCGGg -3' miRNA: 3'- aCGCC-CUGGGUGCAGGuCuuUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 124884 | 0.67 | 0.91099 |
Target: 5'- gGCGGcGGCCC-CGUCaCGGcGACCGu- -3' miRNA: 3'- aCGCC-CUGGGuGCAG-GUCuUUGGUca -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 117825 | 0.69 | 0.833557 |
Target: 5'- cGCGGcgGACCgACGUCCuggacacGGAGGCCAu- -3' miRNA: 3'- aCGCC--CUGGgUGCAGG-------UCUUUGGUca -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 113583 | 0.7 | 0.792184 |
Target: 5'- cGCGGGugaCCGCGuUCCGGuaggagacgugGAGCCAGa -3' miRNA: 3'- aCGCCCug-GGUGC-AGGUC-----------UUUGGUCa -5' |
|||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 113209 | 0.69 | 0.842307 |
Target: 5'- aGCGGGAgCCGgGUCCucgcccggGGAGACgGGc -3' miRNA: 3'- aCGCCCUgGGUgCAGG--------UCUUUGgUCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home