Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 129242 | 0.67 | 0.904467 |
Target: 5'- cGCGGGACUgcugCGCGgggcgaUCCAGGacuagggGACCGGg -3' miRNA: 3'- aCGCCCUGG----GUGC------AGGUCU-------UUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 90469 | 0.67 | 0.905071 |
Target: 5'- cUGCGGGuCCCcgaucaccgggGCGUCCucgacGGGAUCGGg -3' miRNA: 3'- -ACGCCCuGGG-----------UGCAGGu----CUUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 149230 | 0.67 | 0.905071 |
Target: 5'- cGCGGGACCgACGgacCCGGc-GCCGc- -3' miRNA: 3'- aCGCCCUGGgUGCa--GGUCuuUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 106309 | 0.67 | 0.905071 |
Target: 5'- cGCGGG-CCCGuCGUCCAGc--CCGu- -3' miRNA: 3'- aCGCCCuGGGU-GCAGGUCuuuGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 128391 | 0.67 | 0.905071 |
Target: 5'- gGCGGcgGACCC-CGUCUcGAGcCCGGUg -3' miRNA: 3'- aCGCC--CUGGGuGCAGGuCUUuGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 181025 | 0.67 | 0.905071 |
Target: 5'- --gGGaGGCCCGCGUCCugggcaGGAGGCCGc- -3' miRNA: 3'- acgCC-CUGGGUGCAGG------UCUUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 124884 | 0.67 | 0.91099 |
Target: 5'- gGCGGcGGCCC-CGUCaCGGcGACCGu- -3' miRNA: 3'- aCGCC-CUGGGuGCAG-GUCuUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 167831 | 0.67 | 0.91099 |
Target: 5'- gGcCGaGGACCCcgcgcACGUCCGgGAGGCCAa- -3' miRNA: 3'- aC-GC-CCUGGG-----UGCAGGU-CUUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 218493 | 0.67 | 0.91099 |
Target: 5'- cGCGGGucgUCCGCGUCCG--AGCCGu- -3' miRNA: 3'- aCGCCCu--GGGUGCAGGUcuUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 211926 | 0.67 | 0.916127 |
Target: 5'- cGuCGGGACCCcgacgggACGUCCGuGGACgAGa -3' miRNA: 3'- aC-GCCCUGGG-------UGCAGGUcUUUGgUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 101090 | 0.67 | 0.916687 |
Target: 5'- cGCGGa--CCACG-CCGGAGACcCAGa -3' miRNA: 3'- aCGCCcugGGUGCaGGUCUUUG-GUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 145798 | 0.67 | 0.916687 |
Target: 5'- gGUGGaGGCCCGCcagaaGUUCuGGGACCAGc -3' miRNA: 3'- aCGCC-CUGGGUG-----CAGGuCUUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 174334 | 0.67 | 0.916687 |
Target: 5'- gGCGGGgguccgccgcGCCCuCGUCCgccGGGAugCGGa -3' miRNA: 3'- aCGCCC----------UGGGuGCAGG---UCUUugGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 204803 | 0.66 | 0.946159 |
Target: 5'- -cCGGGAggUCCGCGUCcCGGggGCgCGGc -3' miRNA: 3'- acGCCCU--GGGUGCAG-GUCuuUG-GUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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