Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9377 | 3' | -47.9 | NC_002512.2 | + | 128697 | 0.66 | 0.999979 |
Target: 5'- cGCCGGCg--UCuCGGACAAcaccauccuGAACCGCa -3' miRNA: 3'- -UGGCUGaugAG-GCUUGUU---------UUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 136867 | 0.66 | 0.999979 |
Target: 5'- cACCaGCUGCagCUGAACAAGAAgaccgUCGCGg -3' miRNA: 3'- -UGGcUGAUGa-GGCUUGUUUUU-----GGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 66537 | 0.66 | 0.999979 |
Target: 5'- uCCGACcACguaUCCGAA-GAGGACCACc -3' miRNA: 3'- uGGCUGaUG---AGGCUUgUUUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 115228 | 0.66 | 0.999979 |
Target: 5'- gACCGAgaGCaUCCuGGACGAcccGACCACc -3' miRNA: 3'- -UGGCUgaUG-AGG-CUUGUUu--UUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 117832 | 0.66 | 0.999979 |
Target: 5'- gACCGACg--UCCuGGACAcgGAGGCCAUc -3' miRNA: 3'- -UGGCUGaugAGG-CUUGU--UUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 111838 | 0.66 | 0.999961 |
Target: 5'- gUCGA--GC-CCGGGCAcgGGCCACGg -3' miRNA: 3'- uGGCUgaUGaGGCUUGUuuUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 189962 | 0.66 | 0.999961 |
Target: 5'- cCCGGaccuCUUCGAGCugcGGGACCGCGu -3' miRNA: 3'- uGGCUgau-GAGGCUUGu--UUUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 140971 | 0.66 | 0.999949 |
Target: 5'- cCCGaACUgcauguccGCUcCCGAACG--GACCGCGa -3' miRNA: 3'- uGGC-UGA--------UGA-GGCUUGUuuUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 147859 | 0.66 | 0.999949 |
Target: 5'- cGCCGGCgcgaccccgAC-CCGGGCGAcggcucGCCGCGa -3' miRNA: 3'- -UGGCUGa--------UGaGGCUUGUUuu----UGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 225111 | 0.66 | 0.999949 |
Target: 5'- aACCGGCgcaGCUCgaggCGcAGCAGuuGCCACa -3' miRNA: 3'- -UGGCUGa--UGAG----GC-UUGUUuuUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 77093 | 0.66 | 0.999949 |
Target: 5'- cGCCG-CggacCUCCGAGaCGGAGGCCcgGCGg -3' miRNA: 3'- -UGGCuGau--GAGGCUU-GUUUUUGG--UGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 92408 | 0.66 | 0.999949 |
Target: 5'- cCCG-CUGCuggaUCCGAucccCGAGGACCACc -3' miRNA: 3'- uGGCuGAUG----AGGCUu---GUUUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 109855 | 0.66 | 0.999949 |
Target: 5'- gACCGGCgugGCggCGGugGGGAccuACCGCGa -3' miRNA: 3'- -UGGCUGa--UGagGCUugUUUU---UGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 143710 | 0.66 | 0.999949 |
Target: 5'- gGCCGACcuccaGCUcCCGcAGCAGGgccucggaggcGGCCGCGg -3' miRNA: 3'- -UGGCUGa----UGA-GGC-UUGUUU-----------UUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 40531 | 0.66 | 0.999961 |
Target: 5'- aACCGGCgUAC-CgGGAUggGGguGCCACGa -3' miRNA: 3'- -UGGCUG-AUGaGgCUUGuuUU--UGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 111599 | 0.66 | 0.999961 |
Target: 5'- cCCGGauCUucCUCCGGACGAGGGCgGCc -3' miRNA: 3'- uGGCU--GAu-GAGGCUUGUUUUUGgUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 130940 | 0.66 | 0.999961 |
Target: 5'- cACCGACUgaGCUCgaGGCGGAcGACCGCc -3' miRNA: 3'- -UGGCUGA--UGAGgcUUGUUU-UUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 74749 | 0.66 | 0.999961 |
Target: 5'- cACCGGCUugUuccCCGGACGAc--CCAgGa -3' miRNA: 3'- -UGGCUGAugA---GGCUUGUUuuuGGUgC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 149400 | 0.66 | 0.999961 |
Target: 5'- uCCGGCUcCUCgaCGGGCcgcgaGGGGACCGCGg -3' miRNA: 3'- uGGCUGAuGAG--GCUUG-----UUUUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 176079 | 0.66 | 0.999961 |
Target: 5'- cGCCGACacCUCgGAGCGcAGcGCCugGa -3' miRNA: 3'- -UGGCUGauGAGgCUUGU-UUuUGGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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