Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9378 | 3' | -55.1 | NC_002512.2 | + | 81807 | 0.72 | 0.757451 |
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Target: 5'- ----aCGAGGGCCGAcgCGCCgCgaggUCUCCg -3' miRNA: 3'- ucuuaGUUCCCGGCUa-GCGG-G----AGAGG- -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 174324 | 0.72 | 0.73763 |
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Target: 5'- uGggUCAgcaggcgGGGGuCCGccgCGCCCUCgUCCg -3' miRNA: 3'- uCuuAGU-------UCCC-GGCua-GCGGGAG-AGG- -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 179810 | 0.73 | 0.719363 |
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Target: 5'- cGggUCGAacagguaGGUCGGUC-CCCUCUCCg -3' miRNA: 3'- uCuuAGUUc------CCGGCUAGcGGGAGAGG- -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 171738 | 0.74 | 0.680134 |
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Target: 5'- gGGAcGUCGagcucGGGGCCc-UCGCCCUCUCg -3' miRNA: 3'- -UCU-UAGU-----UCCCGGcuAGCGGGAGAGg -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 143156 | 0.74 | 0.670212 |
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Target: 5'- -aGAUCGAGGuCCGGUuggcCGCCCUCUCg -3' miRNA: 3'- ucUUAGUUCCcGGCUA----GCGGGAGAGg -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 218385 | 0.74 | 0.66026 |
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Target: 5'- cGGG-CcAGGGCCucGUCGUCCUCUCCg -3' miRNA: 3'- uCUUaGuUCCCGGc-UAGCGGGAGAGG- -5' |
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| 9378 | 3' | -55.1 | NC_002512.2 | + | 44207 | 0.74 | 0.6403 |
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Target: 5'- uGGAcgCGGGGGaCUGAUCGCCagaUCCg -3' miRNA: 3'- -UCUuaGUUCCC-GGCUAGCGGgagAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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