miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 5' -53.4 NC_002512.2 + 215345 0.66 0.99128
Target:  5'- -----cGGAUCGUgcCCGGCUCcGUCGAc -3'
miRNA:   3'- caucuuCCUAGCA--GGCUGGGaCAGCU- -5'
9378 5' -53.4 NC_002512.2 + 220785 0.66 0.989963
Target:  5'- aUGGAccugcugGGGAUCGUCCucGACCCgcucgugGUCc- -3'
miRNA:   3'- cAUCU-------UCCUAGCAGG--CUGGGa------CAGcu -5'
9378 5' -53.4 NC_002512.2 + 128656 0.66 0.989963
Target:  5'- --cGggGGAUCGagcUCCuccugcugcgggaGACCCUGgCGAa -3'
miRNA:   3'- cauCuuCCUAGC---AGG-------------CUGGGACaGCU- -5'
9378 5' -53.4 NC_002512.2 + 225840 0.66 0.987329
Target:  5'- --cGggGGAUCGagCCGcUCCUGUCc- -3'
miRNA:   3'- cauCuuCCUAGCa-GGCuGGGACAGcu -5'
9378 5' -53.4 NC_002512.2 + 94297 0.67 0.985743
Target:  5'- -gGGGAGcGGUCGUCC-ACCCgGUUGc -3'
miRNA:   3'- caUCUUC-CUAGCAGGcUGGGaCAGCu -5'
9378 5' -53.4 NC_002512.2 + 59118 0.67 0.985743
Target:  5'- -gAGAAGGAccCGUCCGAUCCUca-GGa -3'
miRNA:   3'- caUCUUCCUa-GCAGGCUGGGAcagCU- -5'
9378 5' -53.4 NC_002512.2 + 111494 0.67 0.98401
Target:  5'- aGUAGAcGGAgaguccggaCGUCCGccggcgguagcGCCCUGUCa- -3'
miRNA:   3'- -CAUCUuCCUa--------GCAGGC-----------UGGGACAGcu -5'
9378 5' -53.4 NC_002512.2 + 99465 0.67 0.982122
Target:  5'- cGUAGAAGcGAcUGgCCGACaCCgUGUCGAu -3'
miRNA:   3'- -CAUCUUC-CUaGCaGGCUG-GG-ACAGCU- -5'
9378 5' -53.4 NC_002512.2 + 211860 0.67 0.97545
Target:  5'- -gAGAAGGAccucagcaUCGUCgGcGCCCUGgagCGGg -3'
miRNA:   3'- caUCUUCCU--------AGCAGgC-UGGGACa--GCU- -5'
9378 5' -53.4 NC_002512.2 + 218623 0.71 0.896212
Target:  5'- --cGAAGGAcgcgCGUCgGgACCCUGUCGc -3'
miRNA:   3'- cauCUUCCUa---GCAGgC-UGGGACAGCu -5'
9378 5' -53.4 NC_002512.2 + 186001 0.72 0.868738
Target:  5'- cGUGGu-GGGUCGUCCGGCaCCUGg--- -3'
miRNA:   3'- -CAUCuuCCUAGCAGGCUG-GGACagcu -5'
9378 5' -53.4 NC_002512.2 + 215594 0.72 0.837985
Target:  5'- cGUGGGAGGAcagcgUCGUCCGGgUCUG-CGGc -3'
miRNA:   3'- -CAUCUUCCU-----AGCAGGCUgGGACaGCU- -5'
9378 5' -53.4 NC_002512.2 + 195065 0.74 0.767363
Target:  5'- -cGGGAGGGUCGUCCGgucggggACUCgagggGUCGAg -3'
miRNA:   3'- caUCUUCCUAGCAGGC-------UGGGa----CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.