Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9379 | 3' | -51.6 | NC_002512.2 | + | 226408 | 0.68 | 0.986821 |
Target: 5'- --gGACCCGUCGCG-UCcgCGUC-UCc -3' miRNA: 3'- aagUUGGGCAGUGCuAGuaGCAGcAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 225151 | 0.67 | 0.994823 |
Target: 5'- -aCAGCagCCGUCGCaGUCGUCGgcggCGUUg -3' miRNA: 3'- aaGUUG--GGCAGUGcUAGUAGCa---GCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 223247 | 0.66 | 0.996732 |
Target: 5'- cUUCGACUCcUCGgGcGUCcgCGUCGUCg -3' miRNA: 3'- -AAGUUGGGcAGUgC-UAGuaGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 222473 | 0.66 | 0.996174 |
Target: 5'- -cCGGCCC-UCGCGGUCGUCaaCGUg -3' miRNA: 3'- aaGUUGGGcAGUGCUAGUAGcaGCAg -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 218123 | 0.68 | 0.989722 |
Target: 5'- gUC-GCUCGgguagaaCACGucGUCGUCGUCGUCg -3' miRNA: 3'- aAGuUGGGCa------GUGC--UAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 215363 | 0.75 | 0.803936 |
Target: 5'- gUCGACuCCGUCGCGcgCuUCGcCGUCg -3' miRNA: 3'- aAGUUG-GGCAGUGCuaGuAGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 213493 | 0.66 | 0.997221 |
Target: 5'- cUCAcugcgcGCCCGUCGacuuCGAgggCGUCGUCcggGUCg -3' miRNA: 3'- aAGU------UGGGCAGU----GCUa--GUAGCAG---CAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 209888 | 0.7 | 0.958595 |
Target: 5'- -gUggUCgGUCGCGGggagcaggggcUCAUCGUCGUCu -3' miRNA: 3'- aaGuuGGgCAGUGCU-----------AGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 209219 | 0.67 | 0.99311 |
Target: 5'- -gCGGCCCGUCACGGUCAaacacgagcUCc-UGUCc -3' miRNA: 3'- aaGUUGGGCAGUGCUAGU---------AGcaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 203516 | 0.66 | 0.996732 |
Target: 5'- aUCGGCCCGccgaccagCACGAUCAggaaguucacCGcCGUCu -3' miRNA: 3'- aAGUUGGGCa-------GUGCUAGUa---------GCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 201691 | 0.69 | 0.978951 |
Target: 5'- -gCGGCCgCGUCuggugcgggaucgGCGGcggCGUCGUCGUCg -3' miRNA: 3'- aaGUUGG-GCAG-------------UGCUa--GUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 200094 | 0.66 | 0.997398 |
Target: 5'- ---cGCCCGUCGCGGggucgccgggguacuUCAgcaUCGcCGUCg -3' miRNA: 3'- aaguUGGGCAGUGCU---------------AGU---AGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 193130 | 0.78 | 0.657614 |
Target: 5'- -cCGGCCCGacgUCACGGUCGUCcUCGUCc -3' miRNA: 3'- aaGUUGGGC---AGUGCUAGUAGcAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 191775 | 0.77 | 0.667848 |
Target: 5'- cUCAuCCuCGUCAUcAUCAUCGUCGUCu -3' miRNA: 3'- aAGUuGG-GCAGUGcUAGUAGCAGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 189620 | 0.67 | 0.994823 |
Target: 5'- -gCGGCCgcacgcgauCGUCGCGGUCGgcuUCGUCGg- -3' miRNA: 3'- aaGUUGG---------GCAGUGCUAGU---AGCAGCag -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 179670 | 0.71 | 0.946522 |
Target: 5'- gUCAGCgCCaggugGUaCACGAUCGUCG-CGUCg -3' miRNA: 3'- aAGUUG-GG-----CA-GUGCUAGUAGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 179487 | 0.68 | 0.985153 |
Target: 5'- cUUCGGCggcgUCGUCGCcAUCGUCGUCGg- -3' miRNA: 3'- -AAGUUG----GGCAGUGcUAGUAGCAGCag -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 178550 | 0.75 | 0.79494 |
Target: 5'- aUCgAGCCCGUCACGAUCcgGUUGUgGUg -3' miRNA: 3'- aAG-UUGGGCAGUGCUAG--UAGCAgCAg -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 177329 | 0.66 | 0.997221 |
Target: 5'- gUCGGCCCGguauaguuuguUCAgGGUCAcCGcCGUCc -3' miRNA: 3'- aAGUUGGGC-----------AGUgCUAGUaGCaGCAG- -5' |
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9379 | 3' | -51.6 | NC_002512.2 | + | 173385 | 0.67 | 0.994016 |
Target: 5'- --gGACCUGUUACGGgac-CGUCGUCc -3' miRNA: 3'- aagUUGGGCAGUGCUaguaGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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