miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 3' -51.6 NC_002512.2 + 173385 0.67 0.994016
Target:  5'- --gGACCUGUUACGGgac-CGUCGUCc -3'
miRNA:   3'- aagUUGGGCAGUGCUaguaGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 177329 0.66 0.997221
Target:  5'- gUCGGCCCGguauaguuuguUCAgGGUCAcCGcCGUCc -3'
miRNA:   3'- aAGUUGGGC-----------AGUgCUAGUaGCaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 178550 0.75 0.79494
Target:  5'- aUCgAGCCCGUCACGAUCcgGUUGUgGUg -3'
miRNA:   3'- aAG-UUGGGCAGUGCUAG--UAGCAgCAg -5'
9379 3' -51.6 NC_002512.2 + 179487 0.68 0.985153
Target:  5'- cUUCGGCggcgUCGUCGCcAUCGUCGUCGg- -3'
miRNA:   3'- -AAGUUG----GGCAGUGcUAGUAGCAGCag -5'
9379 3' -51.6 NC_002512.2 + 179670 0.71 0.946522
Target:  5'- gUCAGCgCCaggugGUaCACGAUCGUCG-CGUCg -3'
miRNA:   3'- aAGUUG-GG-----CA-GUGCUAGUAGCaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 189620 0.67 0.994823
Target:  5'- -gCGGCCgcacgcgauCGUCGCGGUCGgcuUCGUCGg- -3'
miRNA:   3'- aaGUUGG---------GCAGUGCUAGU---AGCAGCag -5'
9379 3' -51.6 NC_002512.2 + 191775 0.77 0.667848
Target:  5'- cUCAuCCuCGUCAUcAUCAUCGUCGUCu -3'
miRNA:   3'- aAGUuGG-GCAGUGcUAGUAGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 193130 0.78 0.657614
Target:  5'- -cCGGCCCGacgUCACGGUCGUCcUCGUCc -3'
miRNA:   3'- aaGUUGGGC---AGUGCUAGUAGcAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 200094 0.66 0.997398
Target:  5'- ---cGCCCGUCGCGGggucgccgggguacuUCAgcaUCGcCGUCg -3'
miRNA:   3'- aaguUGGGCAGUGCU---------------AGU---AGCaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 201691 0.69 0.978951
Target:  5'- -gCGGCCgCGUCuggugcgggaucgGCGGcggCGUCGUCGUCg -3'
miRNA:   3'- aaGUUGG-GCAG-------------UGCUa--GUAGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 203516 0.66 0.996732
Target:  5'- aUCGGCCCGccgaccagCACGAUCAggaaguucacCGcCGUCu -3'
miRNA:   3'- aAGUUGGGCa-------GUGCUAGUa---------GCaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 209219 0.67 0.99311
Target:  5'- -gCGGCCCGUCACGGUCAaacacgagcUCc-UGUCc -3'
miRNA:   3'- aaGUUGGGCAGUGCUAGU---------AGcaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 209888 0.7 0.958595
Target:  5'- -gUggUCgGUCGCGGggagcaggggcUCAUCGUCGUCu -3'
miRNA:   3'- aaGuuGGgCAGUGCU-----------AGUAGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 213493 0.66 0.997221
Target:  5'- cUCAcugcgcGCCCGUCGacuuCGAgggCGUCGUCcggGUCg -3'
miRNA:   3'- aAGU------UGGGCAGU----GCUa--GUAGCAG---CAG- -5'
9379 3' -51.6 NC_002512.2 + 215363 0.75 0.803936
Target:  5'- gUCGACuCCGUCGCGcgCuUCGcCGUCg -3'
miRNA:   3'- aAGUUG-GGCAGUGCuaGuAGCaGCAG- -5'
9379 3' -51.6 NC_002512.2 + 218123 0.68 0.989722
Target:  5'- gUC-GCUCGgguagaaCACGucGUCGUCGUCGUCg -3'
miRNA:   3'- aAGuUGGGCa------GUGC--UAGUAGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 222473 0.66 0.996174
Target:  5'- -cCGGCCC-UCGCGGUCGUCaaCGUg -3'
miRNA:   3'- aaGUUGGGcAGUGCUAGUAGcaGCAg -5'
9379 3' -51.6 NC_002512.2 + 223247 0.66 0.996732
Target:  5'- cUUCGACUCcUCGgGcGUCcgCGUCGUCg -3'
miRNA:   3'- -AAGUUGGGcAGUgC-UAGuaGCAGCAG- -5'
9379 3' -51.6 NC_002512.2 + 225151 0.67 0.994823
Target:  5'- -aCAGCagCCGUCGCaGUCGUCGgcggCGUUg -3'
miRNA:   3'- aaGUUG--GGCAGUGcUAGUAGCa---GCAG- -5'
9379 3' -51.6 NC_002512.2 + 226408 0.68 0.986821
Target:  5'- --gGACCCGUCGCG-UCcgCGUC-UCc -3'
miRNA:   3'- aagUUGGGCAGUGCuAGuaGCAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.