miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9380 3' -55.8 NC_002512.2 + 177103 0.74 0.657045
Target:  5'- --gCGUCuCCGCGACCaGGAGGUC-CGGg -3'
miRNA:   3'- caaGCAG-GGUGCUGG-CCUCUAGcGUC- -5'
9380 3' -55.8 NC_002512.2 + 155019 0.73 0.706009
Target:  5'- -gUCGUCCCGgGugCGGuuccggagcGGAUCGCGa -3'
miRNA:   3'- caAGCAGGGUgCugGCC---------UCUAGCGUc -5'
9380 3' -55.8 NC_002512.2 + 181679 0.73 0.706009
Target:  5'- --gCGcCCCGCGGCCGG-GAUccCGCGGg -3'
miRNA:   3'- caaGCaGGGUGCUGGCCuCUA--GCGUC- -5'
9380 3' -55.8 NC_002512.2 + 217771 0.71 0.771869
Target:  5'- --cCGUCCC-CGucGCCGG-GGUCGCGGc -3'
miRNA:   3'- caaGCAGGGuGC--UGGCCuCUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 107211 0.71 0.789762
Target:  5'- --cCGggCCGCGGCCGGGGAgcCGCGGu -3'
miRNA:   3'- caaGCagGGUGCUGGCCUCUa-GCGUC- -5'
9380 3' -55.8 NC_002512.2 + 155880 0.7 0.84001
Target:  5'- uGUUCGUCCC-CGA-CGGcGggCGCGGg -3'
miRNA:   3'- -CAAGCAGGGuGCUgGCCuCuaGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 193372 0.7 0.855421
Target:  5'- aGUUCGUCgCCGCGGgCGGGGA-CGaCAc -3'
miRNA:   3'- -CAAGCAG-GGUGCUgGCCUCUaGC-GUc -5'
9380 3' -55.8 NC_002512.2 + 87619 0.7 0.855421
Target:  5'- --cCGUCCCcggcccggacgACGACCGGAucccaGAUCGgAGa -3'
miRNA:   3'- caaGCAGGG-----------UGCUGGCCU-----CUAGCgUC- -5'
9380 3' -55.8 NC_002512.2 + 88982 0.69 0.870078
Target:  5'- -gUCGUCCCcgucguCGAcCCGGAGcgCGgGGa -3'
miRNA:   3'- caAGCAGGGu-----GCU-GGCCUCuaGCgUC- -5'
9380 3' -55.8 NC_002512.2 + 141274 0.69 0.877109
Target:  5'- cGUUCGUCCCgACG-CCGGccGcgCGCAc -3'
miRNA:   3'- -CAAGCAGGG-UGCuGGCCu-CuaGCGUc -5'
9380 3' -55.8 NC_002512.2 + 142608 0.69 0.879865
Target:  5'- --cCGUccacCCCACGAccgcguguucgcuccCCGGAGAccccUCGCAGg -3'
miRNA:   3'- caaGCA----GGGUGCU---------------GGCCUCU----AGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 89856 0.69 0.883936
Target:  5'- ---gGUUCUGCGugCGGuGAUCGUAGu -3'
miRNA:   3'- caagCAGGGUGCugGCCuCUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 200502 0.69 0.883936
Target:  5'- --gCGUCCUcCGACCGGGGcUCGUc- -3'
miRNA:   3'- caaGCAGGGuGCUGGCCUCuAGCGuc -5'
9380 3' -55.8 NC_002512.2 + 224329 0.69 0.886609
Target:  5'- -gUCGUCuguuuuuccgcggcgCCGCG-CCGG-GGUCGCGGg -3'
miRNA:   3'- caAGCAG---------------GGUGCuGGCCuCUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 157064 0.68 0.89696
Target:  5'- cGggCGUCCCGgGGuCCGG-GGUCGCc- -3'
miRNA:   3'- -CaaGCAGGGUgCU-GGCCuCUAGCGuc -5'
9380 3' -55.8 NC_002512.2 + 226574 0.68 0.903151
Target:  5'- -cUCGcgcUCCC-CGGCCaGGAGggCGCGGc -3'
miRNA:   3'- caAGC---AGGGuGCUGG-CCUCuaGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 94285 0.68 0.914875
Target:  5'- --gCGU-CCACGGCCGGGGA--GCGGu -3'
miRNA:   3'- caaGCAgGGUGCUGGCCUCUagCGUC- -5'
9380 3' -55.8 NC_002512.2 + 76662 0.68 0.914875
Target:  5'- cUUC-UCCCgacgaaagaACGACCGGAGAUcCGCu- -3'
miRNA:   3'- cAAGcAGGG---------UGCUGGCCUCUA-GCGuc -5'
9380 3' -55.8 NC_002512.2 + 178816 0.68 0.920404
Target:  5'- aGUUgGUCCgacaGCGcCCGGAcgugcucgGGUCGCAGg -3'
miRNA:   3'- -CAAgCAGGg---UGCuGGCCU--------CUAGCGUC- -5'
9380 3' -55.8 NC_002512.2 + 193923 0.67 0.930794
Target:  5'- --gCGUCCCggacuccgcugACGGCCGGGGAacgUCGUc- -3'
miRNA:   3'- caaGCAGGG-----------UGCUGGCCUCU---AGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.