miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 5' -54.2 NC_002512.2 + 91507 0.66 0.980096
Target:  5'- cUGAGAcgguaCGUgCACUcGGAGCCGCugguCCu -3'
miRNA:   3'- aACUCUc----GCAaGUGA-CCUCGGUGu---GG- -5'
9381 5' -54.2 NC_002512.2 + 124010 0.66 0.980096
Target:  5'- cUGAGcGUGUUCGCgcugccccUGG-GCCACGuCCc -3'
miRNA:   3'- aACUCuCGCAAGUG--------ACCuCGGUGU-GG- -5'
9381 5' -54.2 NC_002512.2 + 111931 0.66 0.977845
Target:  5'- -gGGGAGCGUcCACgcaGGCCugAUCg -3'
miRNA:   3'- aaCUCUCGCAaGUGaccUCGGugUGG- -5'
9381 5' -54.2 NC_002512.2 + 194725 0.66 0.975411
Target:  5'- -gGGGGGCGcg-GCUGGuGCCGaucucCACCg -3'
miRNA:   3'- aaCUCUCGCaagUGACCuCGGU-----GUGG- -5'
9381 5' -54.2 NC_002512.2 + 156846 0.66 0.969968
Target:  5'- -cGGGGGC---CGCUGcuGCCACACCu -3'
miRNA:   3'- aaCUCUCGcaaGUGACcuCGGUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 229557 0.67 0.963714
Target:  5'- --cGGGGCGccggCGgaGGAGCgCGCGCCg -3'
miRNA:   3'- aacUCUCGCaa--GUgaCCUCG-GUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 154 0.67 0.963714
Target:  5'- --cGGGGCGccggCGgaGGAGCgCGCGCCg -3'
miRNA:   3'- aacUCUCGCaa--GUgaCCUCG-GUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 229681 0.67 0.948597
Target:  5'- -aGAGAGCGg-CGCgacggGGGGCCagggcagcccACGCCc -3'
miRNA:   3'- aaCUCUCGCaaGUGa----CCUCGG----------UGUGG- -5'
9381 5' -54.2 NC_002512.2 + 278 0.67 0.948597
Target:  5'- -aGAGAGCGg-CGCgacggGGGGCCagggcagcccACGCCc -3'
miRNA:   3'- aaCUCUCGCaaGUGa----CCUCGG----------UGUGG- -5'
9381 5' -54.2 NC_002512.2 + 95411 0.68 0.944249
Target:  5'- -cGAGGGCG-UCGCgcaggaGGAGCagACACUg -3'
miRNA:   3'- aaCUCUCGCaAGUGa-----CCUCGg-UGUGG- -5'
9381 5' -54.2 NC_002512.2 + 227301 0.69 0.91321
Target:  5'- -gGGGAGCGccagCAUgggGGAGaCGCGCCg -3'
miRNA:   3'- aaCUCUCGCaa--GUGa--CCUCgGUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 162090 0.69 0.907208
Target:  5'- gUGGGGGUGacCGCUGaGGCCAgcuCACCg -3'
miRNA:   3'- aACUCUCGCaaGUGACcUCGGU---GUGG- -5'
9381 5' -54.2 NC_002512.2 + 115860 0.69 0.894506
Target:  5'- -cGAG-GCGUUCGCcgagGcGGGCC-CGCCg -3'
miRNA:   3'- aaCUCuCGCAAGUGa---C-CUCGGuGUGG- -5'
9381 5' -54.2 NC_002512.2 + 192099 0.69 0.887811
Target:  5'- -cGAGGGCGgcgUCAUguuccacgGGAGCgACAgCCg -3'
miRNA:   3'- aaCUCUCGCa--AGUGa-------CCUCGgUGU-GG- -5'
9381 5' -54.2 NC_002512.2 + 118570 0.7 0.858837
Target:  5'- -cGGGAGCG-UCGaaagGGAGCCGCgAUCg -3'
miRNA:   3'- aaCUCUCGCaAGUga--CCUCGGUG-UGG- -5'
9381 5' -54.2 NC_002512.2 + 202597 0.71 0.800576
Target:  5'- -cGAGAGCGUg-ACUGuuuucgagggcaGAGCgCACACCg -3'
miRNA:   3'- aaCUCUCGCAagUGAC------------CUCG-GUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 121386 0.71 0.800576
Target:  5'- -gGAGGGCGacgGCcggacGGAGCCGCGCCu -3'
miRNA:   3'- aaCUCUCGCaagUGa----CCUCGGUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 96508 0.72 0.763782
Target:  5'- ---cGGGCGacCGCcggagGGAGCCGCGCCg -3'
miRNA:   3'- aacuCUCGCaaGUGa----CCUCGGUGUGG- -5'
9381 5' -54.2 NC_002512.2 + 147073 0.73 0.725131
Target:  5'- gUGuGGGCGacgCuCUGGAGCCGCugCu -3'
miRNA:   3'- aACuCUCGCaa-GuGACCUCGGUGugG- -5'
9381 5' -54.2 NC_002512.2 + 115571 0.77 0.485055
Target:  5'- --cGGAGCGUggCGCUGGAGCaccuGCGCCg -3'
miRNA:   3'- aacUCUCGCAa-GUGACCUCGg---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.