miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 3' -55.9 NC_002512.2 + 92542 0.71 0.786549
Target:  5'- cGGCCGcgGCGGCCG-CGGCGaCG-ACg -3'
miRNA:   3'- -CCGGCaaCGCUGGUuGCCGCaGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 94249 0.71 0.790091
Target:  5'- aGGCCGccgGCGACCcgGACccccgagaacucgcuGGCGUC-CACg -3'
miRNA:   3'- -CCGGCaa-CGCUGG--UUG---------------CCGCAGuGUG- -5'
9382 3' -55.9 NC_002512.2 + 73342 0.71 0.804037
Target:  5'- aGCCGUcacGCGcuCCGAacCGGCGUCGCAg -3'
miRNA:   3'- cCGGCAa--CGCu-GGUU--GCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 101425 0.71 0.804037
Target:  5'- gGGCacaGcgGCGGCCGGCGGCGcggCgACGCc -3'
miRNA:   3'- -CCGg--CaaCGCUGGUUGCCGCa--G-UGUG- -5'
9382 3' -55.9 NC_002512.2 + 156494 0.71 0.804037
Target:  5'- gGGCUGggcggacacgGCGGCCuggGCGGCGggGCGCg -3'
miRNA:   3'- -CCGGCaa--------CGCUGGu--UGCCGCagUGUG- -5'
9382 3' -55.9 NC_002512.2 + 217781 0.71 0.804037
Target:  5'- cGCCGgggucGCGGCCGGCuggcggaucGGCGUCGC-Cg -3'
miRNA:   3'- cCGGCaa---CGCUGGUUG---------CCGCAGUGuG- -5'
9382 3' -55.9 NC_002512.2 + 131405 0.71 0.804037
Target:  5'- aGGCCGgggaagagcUGCGACacgguGACGGCGggcuccCGCGCg -3'
miRNA:   3'- -CCGGCa--------ACGCUGg----UUGCCGCa-----GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 160836 0.71 0.804037
Target:  5'- aGGCgG--GCGGCCGGCGGCGcugggCGCAg -3'
miRNA:   3'- -CCGgCaaCGCUGGUUGCCGCa----GUGUg -5'
9382 3' -55.9 NC_002512.2 + 227681 0.71 0.804037
Target:  5'- cGCCGccgGCGACCGagacgacgacgGCGGCGgggGCGCg -3'
miRNA:   3'- cCGGCaa-CGCUGGU-----------UGCCGCag-UGUG- -5'
9382 3' -55.9 NC_002512.2 + 192056 0.7 0.812565
Target:  5'- -uUCGUUGCGACCuguACGGC-UCGgACg -3'
miRNA:   3'- ccGGCAACGCUGGu--UGCCGcAGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 143734 0.7 0.820941
Target:  5'- gGGCCucggagGCGGCC-GCGGCGUCGg-- -3'
miRNA:   3'- -CCGGcaa---CGCUGGuUGCCGCAGUgug -5'
9382 3' -55.9 NC_002512.2 + 146948 0.7 0.820941
Target:  5'- uGGCCGUgaagcGCGA-CGACGGCGgcCGCGg -3'
miRNA:   3'- -CCGGCAa----CGCUgGUUGCCGCa-GUGUg -5'
9382 3' -55.9 NC_002512.2 + 204871 0.7 0.829155
Target:  5'- aGGUCc--GCGACCGACGGCGagcucUCGgACg -3'
miRNA:   3'- -CCGGcaaCGCUGGUUGCCGC-----AGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 226693 0.7 0.837201
Target:  5'- gGGCCGUcGCccgCGGCGGCGUCGaGCg -3'
miRNA:   3'- -CCGGCAaCGcugGUUGCCGCAGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 124889 0.7 0.845073
Target:  5'- cGGCCccGUcacgGCGACCGuuCGGCGUCGacUACc -3'
miRNA:   3'- -CCGG--CAa---CGCUGGUu-GCCGCAGU--GUG- -5'
9382 3' -55.9 NC_002512.2 + 181339 0.69 0.852763
Target:  5'- cGCCGggGC-AUCAGCaGGCGgCACGCg -3'
miRNA:   3'- cCGGCaaCGcUGGUUG-CCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 126334 0.69 0.852763
Target:  5'- aGGCCGccGCGuCCGggACgGGCG-CGCACg -3'
miRNA:   3'- -CCGGCaaCGCuGGU--UG-CCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 202857 0.69 0.863213
Target:  5'- cGCCGUagcugucguagcucaUGaUGGCCAcgaACGGCGUCuGCACc -3'
miRNA:   3'- cCGGCA---------------AC-GCUGGU---UGCCGCAG-UGUG- -5'
9382 3' -55.9 NC_002512.2 + 76833 0.69 0.867576
Target:  5'- --aCGUUacucucaacGCGGCCGACGGCGUUcgaguaggGCGCg -3'
miRNA:   3'- ccgGCAA---------CGCUGGUUGCCGCAG--------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 169070 0.69 0.874687
Target:  5'- gGGCUcc-GCGG-CGGCGGCGUCGCGg -3'
miRNA:   3'- -CCGGcaaCGCUgGUUGCCGCAGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.